Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq3522 304 5e-80 seq1706 239 2e-60 seq2186 176 2e-41 seq879 95.1 5e-17 seq38 91.5 6e-16 >seq3522 Length=220 Score = 304 bits (336), Expect = 5e-80 Identities = 197/215 (92%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 355 CTGGACTGAGGTCCGCGC--TCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGT 412 |||||| |||| |||||| || ||||||||||||||||||||||||| ||||| ||||| Sbjct 215 CTGGACCGAGGACCGCGCCTTCGGGCTAGGATGCTGGCGTAATGGTTGCAAGCGACCCGT 156 Query 413 CTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGC 472 |||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | | Sbjct 155 CTTGAAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGCGTTAAACCCATAC 96 Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGAT 532 ||| |||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| Sbjct 95 GCGGAATGAAAGTGAACGTAGGTGAGAACCCGTCAGGGTGCATCATCGACCGATCCTGAT 36 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTT 567 ||||||||||||||||||||| ||||||||||||| Sbjct 35 GTCTTCGGATGGATTTGAGTACGAGCATAGCTGTT 1 >seq1706 Length=2007 Score = 239 bits (264), Expect = 2e-60 Identities = 238/313 (76%), Gaps = 38/313 (12%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAAC 466 ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| |||| Sbjct 317 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGAAAC 376 Query 467 CCGTGCGCGTAATGAAAGTGAACG----------------GAGGTGGGAACCCGTGAGGG 510 || ||||| ||||||||| || | ||||| |||| || || Sbjct 377 CCAAGCGCGAAATGAAAGTAAAGGATAGTGTAAACTGTCTGAGGTAGGAAATGCTGCGGA 436 Query 511 T----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATTTGA 550 | |||| ||||||||||| ||| ||||| || ||||||| Sbjct 437 TTTCGGTATGGGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATTTGA 495 Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 || ||||| | |||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 496 GTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAAGCC 555 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 || ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| ||| Sbjct 556 AGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAACTTG 615 Query 671 GGTATAGGGGCGA 683 ||||||||||||| Sbjct 616 GGTATAGGGGCGA 628 >seq2186 Length=867 Score = 176 bits (194), Expect = 2e-41 Identities = 135/160 (84%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 146 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 205 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 206 ATAAGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 265 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || ||||||||||||| Sbjct 266 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAAGCG 305 Score = 96.9 bits (106), Expect = 1e-17 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 ||||| ||||| | |||||||||||| |||||||||||||||||||||||| | || Sbjct 670 TGGCGAAATGGAGCGATTCGGCCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTG 729 Query 447 CGAGTGTTTGGGTG-TCAAACCCGTGCGCGT-AATGAAAGTGAACGG 491 | ||| |||||||| | |||||| | |||| ||||||||| || || Sbjct 730 CAAGTATTTGGGTGTTGAAACCCCAGTGCGTAAATGAAAGTAAAGGG 776 >seq879 Length=12069 Score = 95.1 bits (104), Expect = 5e-17 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 61 CAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCG 120 |||| | || | || |||||||| | ||||||||||||||| | ||||||| ||||| Sbjct 11426 CAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAATATAAGTGCGAGACCGGTAGCG 11485 Query 121 CACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 ||||||| |||| ||||||||||||| |||||||||| Sbjct 11486 AACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGGAAA 11525 >seq38 Length=125758 Score = 91.5 bits (100), Expect = 6e-16 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 411 GTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCAAACCCG 469 |||||| |||||||||||||||||||||||| | ||| ||| |||||||| | |||||| Sbjct 125464 GTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTATTTGGGTGTTGAAACCCC 125405 Query 470 TGCGCGTAATGAAAGTGAACGG 491 | ||||||||||||| || || Sbjct 125404 AGTGCGTAATGAAAGTAAAGGG 125383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079888116800