Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001078535.1_202014-05-15] 5,216 sequences; 34,452,595 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2137 268 3e-69 seq1059 197 5e-48 seq352 192 2e-46 seq1050 125 2e-26 seq1706 95.1 4e-17 >seq2137 Length=955 Score = 268 bits (296), Expect = 3e-69 Identities = 257/324 (79%), Gaps = 13/324 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 322 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 263 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||| |||||| ||||| || || | | Sbjct 262 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCGCCTGACGATGTCTTCCACGTAGCTT 203 Query 127 GGCCCGCGAAGGACCT----TAACGCCAGAAA--ATGGTCGGTGAAG---ACCAGTTCCG 177 | | | | | |||| || | |||| | | | | |||| ||||||| | Sbjct 202 GCCTAG-GTATAACCTGGCTTATTTCTAGAACTGAGCGACCGCGAAGCCAACCAGTTGCT 144 Query 178 -CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG 236 | |||| | ||||||||| ||| | || ||||||||||||||| |||| | | | Sbjct 143 ACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGGTATTTCACGTGCGGCAGAGC-- 86 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||| Sbjct 85 CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAA 26 Query 297 CAGGGTCTTCTTTCCCCGCTGATT 320 |||||||||||||||||||||||| Sbjct 25 CAGGGTCTTCTTTCCCCGCTGATT 2 >seq1059 Length=7624 Score = 197 bits (218), Expect = 5e-48 Identities = 151/178 (85%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCT 238 ||||| | ||||||| | || ||| |||||||||||||||| || | || | || Sbjct 7449 TTCATGGTATAAGTAAGACGACATTAAAAGTAGTGGTATTTCACTGTCGGCAAAGC--CT 7506 Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||||||| ||||||||| ||||||| |||||| ||| |||||||||||||||||||| Sbjct 7507 CCCACTTATACTACACCTCCTAAGTCATCTCACAACGTCAGACTAGAGTCAAGCTCAACA 7566 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| Sbjct 7567 GGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAG 7624 >seq352 Length=26253 Score = 192 bits (212), Expect = 2e-46 Identities = 115/121 (95%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 22127 TGACGAGGCATTTGGCTACCTTAAGAGAGACATAGTTACTCCCGTCGTTTACCCGCGCTT 22068 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACAT 534 |||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||| Sbjct 22067 GGTTGAATCTCTTCATTTTGACATTCAAATCACTGGGCAGAAATCACATTGCGTCAACAT 22008 Query 535 C 535 | Sbjct 22007 C 22007 >seq1050 Length=7825 Score = 125 bits (138), Expect = 2e-26 Identities = 90/104 (87%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||| || Sbjct 160 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTCTG 219 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAAT 110 | ||||||||||||||||||||||||||||||||| | |||| Sbjct 220 TTCTAACAGATGTGCCGCCCCAGCCAAACTCCCCACTTTCCAAT 263 >seq1706 Length=2007 Score = 95.1 bits (104), Expect = 4e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2007 TTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 1951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635114707968