Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F001306755.1_202015-10-05] 3,745 sequences; 32,921,669 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3407 199 1e-48 seq546 158 4e-36 >seq3407 Length=1843 Score = 199 bits (220), Expect = 1e-48 Identities = 255/344 (74%), Gaps = 7/344 (2%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGG-CTTACCAAGGCGACGATCAGTAGCCGAC 219 |||| |||||| ||||||||| ||| | ||||||||| | | ||| |||| | Sbjct 612 GCGTAAGATTAGGTAGTTGGTAGTTTAATAGACTTACCAAGCCTGCAATCTTTAGCTGGT 671 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCT-ACGGGAGGCA 278 ||| || |||| |||||||||| ||||||| |||| ||||||| | | ||||| Sbjct 672 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 731 Query 279 GCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 |||||| ||||| ||| |||||| || ||||| |||| |||||| || ||||| || | Sbjct 732 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAG 791 Query 339 AAGGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||| ||| ||||| |||| || | ||||| || |||||| |||||| | || | Sbjct 792 AAGGCTAAATAGGTTGTAAAACTCTTTCGTTAAGGAGGAAAATGACAGTACTTAAAGAAG 851 Query 398 AAGCCCCGGCTAACTA--CGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 ||| | |||||| || ||||||||||| |||||||||||| | || ||| |||| Sbjct 852 AAGTTCTGGCTAA-TACCCGTGCCAGCAGTCGCGGTAATACGGGAAGAGCGAGCATTATT 910 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | ||| | | |||||||||||| |||||| |||| |||||| Sbjct 911 CAAAATGA-TTAGGCGTAAAGGGTTTGTAGGTTGTTTTTTAAGT 953 >seq546 Length=4094 Score = 158 bits (174), Expect = 4e-36 Identities = 188/250 (75%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 ||||||||| | | ||| |||| | ||| || |||| |||||||||| |||||| Sbjct 1880 CTTACCAAGCCTGCAATCTTTAGCTGGTTTGAAAGAACGATCAGCCACATTGGGACTGAG 1821 Query 252 ACACGGTCCAAACTCCT-ACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 | |||| ||||||| | | ||||||||||| ||||| ||| |||||| || ||||| Sbjct 1820 AAACGGCCCAAACTTTTTAAAAAAGGCAGCAGTGAGGAATTTTGGACAATGAGCGAAAGC 1761 Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-CTTCGGGTCGTAAAGCTCTGTCCTCA 369 |||| |||||| || ||||| || |||||| ||| ||||| |||| || | | Sbjct 1760 TTGATCCAGCAATACCAAGTGAGTGAAGAAGGCTAAATAGGTTGTAAAACTCTTTCGTTA 1701 Query 370 AGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTA--CGTGCCAGCAGCCG 427 |||| || |||||| |||||| | || |||| | |||||| || ||||||||||| || Sbjct 1700 AGGAGGAAAATGACAGTACTTAAAGAAGAAGTTCTGGCTAA-TACCCGTGCCAGCAGTCG 1642 Query 428 CGGTAATACG 437 |||||||||| Sbjct 1641 CGGTAATACG 1632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497543914880