Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq444 259 7e-67 seq238 259 7e-67 seq12 259 7e-67 seq223 206 4e-51 seq253 116 6e-24 seq226 80.6 4e-13 >seq444 Length=8335 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 2554 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 2611 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || ||||||||| ||||||||| | |||||| |||||| |||| Sbjct 2612 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTAGCACGATACGTATTCAAAAGATT 2671 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| Sbjct 2672 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAGCGTACCAGTGTAGCGCGCGTGCG 2731 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2732 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 2780 >seq238 Length=8787 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 2795 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 2852 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || ||||||||| ||||||||| | |||||| |||||| |||| Sbjct 2853 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTAGCACGATACGTATTCAAAAGATT 2912 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| Sbjct 2913 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAGCGTACCAGTGTAGCGCGCGTGCG 2972 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2973 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 3021 >seq12 Length=1206637 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 60557 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 60614 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || ||||||||| ||||||||| | |||||| |||||| |||| Sbjct 60615 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTAGCACGATACGTATTCAAAAGATT 60674 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| Sbjct 60675 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAGCGTACCAGTGTAGCGCGCGTGCG 60734 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 60735 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 60783 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 75100 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 75157 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || ||||||||| ||||||||| | |||||| |||||| |||| Sbjct 75158 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTAGCACGATACGTATTCAAAAGATT 75217 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| Sbjct 75218 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAGCGTACCAGTGTAGCGCGCGTGCG 75277 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 75278 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 75326 >seq223 Length=9840 Score = 206 bits (228), Expect = 4e-51 Identities = 167/198 (84%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 196 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 139 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || ||||||||| ||||||||| | |||||| |||||| |||| Sbjct 138 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTAGCACGATACGTATTCAAAAGATT 79 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| Sbjct 78 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAGCGTACCAGTGTAGCGCGCGTGCG 19 Query 180 GCCCAGAACATCTAAGGG 197 |||||||||||||||||| Sbjct 18 GCCCAGAACATCTAAGGG 1 >seq253 Length=11029 Score = 116 bits (128), Expect = 6e-24 Identities = 66/67 (99%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCC 63 Query 222 AACTTCC 228 ||||||| Sbjct 64 AACTTCC 70 >seq226 Length=9547 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || ||| |||||||| ||| |||||||||| ||| Sbjct 64 GTACAAAGGGCAGGGACGTAATCAATGCAAGC-TGATGACTTGCGTTTACTAGGAA-TTC 7 Query 61 CTCGTT 66 |||||| Sbjct 6 CTCGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751993917025