Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq238 426 3e-117 seq444 223 6e-56 seq12 223 6e-56 seq22 95.1 2e-17 >seq238 Length=8787 Score = 426 bits (472), Expect = 3e-117 Identities = 280/308 (91%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 11 GGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGG 70 || ||||||||| | |||| || ||||||||||||||||||||||| |||||| ||||| Sbjct 3749 GGTCGGGCCTTTTTTCCTGGAGAACCGCATGCCCTTCACTGGGTGTGTCGGGGAACCAGG 3690 Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCAT 130 |||||||| |||| |||| ||| | |||||| |||||| ||||||||| | |||||| Sbjct 3689 ACTTTTACCGTGAACAAATCAGATCGCTCAAAGAAGGCCTATGCTCGAATGTACTAGCAT 3630 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 3629 GGAATAATAGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 3570 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 3569 TAATAGGGACAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 3510 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| Sbjct 3509 TGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-GAACGAAA 3451 Query 311 GTTAGGGG 318 |||||||| Sbjct 3450 GTTAGGGG 3443 >seq444 Length=8335 Score = 223 bits (246), Expect = 6e-56 Identities = 202/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 3523 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 3464 Query 130 TGGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| ||| | | | |||||||||||||||| | | | | |||||| Sbjct 3463 TGGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCACGCCAGG-GTAATG 3405 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 3404 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAACGTCAGAGGTGAAATTCTTGGATCG 3345 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 3344 TTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 3286 Query 309 AAGTTAGGGG 318 |||| ||||| Sbjct 3285 AAGTCAGGGG 3276 >seq12 Length=1206637 Score = 223 bits (246), Expect = 6e-56 Identities = 202/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 61455 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 61396 Query 130 TGGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| ||| | | | |||||||||||||||| | | | | |||||| Sbjct 61395 TGGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCACGCCAGG-GTAATG 61337 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 61336 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAACGTCAGAGGTGAAATTCTTGGATCG 61277 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 61276 TTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 61218 Query 309 AAGTTAGGGG 318 |||| ||||| Sbjct 61217 AAGTCAGGGG 61208 Score = 223 bits (246), Expect = 6e-56 Identities = 202/250 (81%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 75998 TTTACTGTGAAAAAATTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 75939 Query 130 TGGAATAATAGAATAGGACGTGCG-GTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATG 188 |||||||||| ||| ||| | | | |||||||||||||||| | | | | |||||| Sbjct 75938 TGGAATAATAAGATACGACCTTGGTGGTCTATTTTGTTGGTTTGCACGCCAGG-GTAATG 75880 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||||||||| ||| |||||| | |||| | |||||||||||||||||||||| Sbjct 75879 ATTAATAGGGACAGTTGGGGGTATTCATATTTCAACGTCAGAGGTGAAATTCTTGGATCG 75820 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 | |||| | || |||||||| || ||||||||||||||||||||||| |||||| Sbjct 75819 TTGAAAGATGAGCTTAGGCGAAAGCATTTACCAAGGATGTTTTCATTAATCA-AGAACGA 75761 Query 309 AAGTTAGGGG 318 |||| ||||| Sbjct 75760 AAGTCAGGGG 75751 >seq22 Length=940546 Score = 95.1 bits (104), Expect = 2e-17 Identities = 80/97 (82%), Gaps = 5/97 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC----GAATACATTAGCA 129 |||||| ||||||| |||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 513043 TTTACTGTGAAAAATTTAGAGTGTTTAAAGCAGGCGTTTGCTCATTTGAATACATTAGCA 513102 Query 130 TGGAATAATAGAATAGGAC-GTGCGGTTCTATTTTGT 165 ||||| |||| ||| ||| || | |||||||||| Sbjct 513103 TGGAAAAATAATATACGACTTTGGTGGTCTATTTTGT 513139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915192358080