Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq238 704 0.0 seq12 264 5e-68 seq444 241 5e-61 >seq238 Length=8787 Score = 704 bits (780), Expect = 0.0 Identities = 566/668 (85%), Gaps = 20/668 (3%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| |||||||||||||||||||||| |||||||||||| |||| ||||||||||||||| Sbjct 1887 TGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATGGGAGGTAAAT 1828 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1827 TTCTTCTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 1768 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||| |||||| |||||| |||||||||||||||||||||||||||| || Sbjct 1767 TGAAAAGCACTTTGAAAAGAGGGTTAAATAGCACGTGAAATTGTTGAAAGGGAAGCGTTT 1708 Query 203 GCAACCAGACTTGCCCGCAGTT--GCTCAACCGG-CCCCTCGGCCGGTGCACTCTTCTGC 259 | |||||||||| ||| ||| | ||| |||| ||| ||||||||||| || Sbjct 1707 GTGACCAGACTTG--CGCCGTTCCGATCATCCGGTGTTCTC-ACCGGTGCACTC-GGGGC 1652 Query 260 GG-TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTC 318 || ||||||||||||| | | ||||| ||||||||| | ||||| || | | ||||| Sbjct 1651 GGCTCAGGCCAGCATCGGTTTTGGCGGGGGGATAAAGGTTCGGGGAACGTAG-CTCCTTC 1593 Query 319 GGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGGC 378 ||| |||||||||||| ||| | ||||| | |||| |||| ||||| ||||| | || Sbjct 1592 -GGGAGTGTTATAGCCCCGGGCGTAATGC-CCTCGCCGGGACCGAGGTTCGCGCATCTGC 1535 Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||||||||||||||| | | || ||||||||| |||||||||||||||||| | Sbjct 1534 AAGGATGCTGGCGTAATGGTCATCAACGACCCGTCTTGAAACACGGACCAAGGAGTCAAG 1475 Query 439 CATCTATGCGAGTGTTTGGGTGT-CAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGG 497 | | |||||||||||||||| ||||||| ||||||||||||||||||| ||||| Sbjct 1474 GTTTTGCGCGAGTGTTTGGGTGTAGAAACCCGCACGCGTAATGAAAGTGAACGTAGGTGA 1415 Query 498 GAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAG 557 || | || ||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1414 GA----GCTTCGGCGCATCATCGACCGATCCTGATGTATTCGGATGGATTTGAGTAAGAG 1359 Query 558 CAT--AGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 | | ||| | ||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1358 CGTTAAGC--CTTGGACCCGAAAGATGGTGAACTATGCTTGGATAGGGTGAAGCCAGAGG 1301 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 |||||||||||||||||||||||||||||| ||||||||||||||||||||| || | || Sbjct 1300 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGACGTGCAAATCGATCGTCAAATCTGAGCAT 1241 Query 676 AGGGGCGA 683 ||||||| Sbjct 1240 GGGGGCGA 1233 >seq12 Length=1206637 Score = 264 bits (292), Expect = 5e-68 Identities = 253/323 (78%), Gaps = 26/323 (8%) Strand=Plus/Minus Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 |||||| ||||| | || ||||||||| |||||||||||||||||||||||| | | Sbjct 54621 CTGGCGAAATGGAGCGATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGT 54562 Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACG-------------- 490 || ||| || |||||| |||||| ||| ||||||||| || | Sbjct 54561 GCAAGTATTAGGGTGTGGAAACCCAAATGCGCAATGAAAGTAAAGGACACATTAGTGTCT 54502 Query 491 GAGGTGGGAAC---CCGTGAGGGT----GCACCATCGACCGATCCTGATGTCTTCGGATG 543 | ||| |||| | || | ||| |||| ||||||||||| ||| || ||| || Sbjct 54501 GTGGTAGGAAGGAGCTGTAATGGTTCTGGCACTATCGACCGATCATGAAC-CTCCGGGTG 54443 Query 544 ---GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 54442 AAAGATTTGAGTATGAGCATATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAATA 54383 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 54382 GGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATC 54323 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||||| ||||||||||||| Sbjct 54322 GTCAAATTTAGGTATAGGGGCGA 54300 Score = 264 bits (292), Expect = 5e-68 Identities = 253/323 (78%), Gaps = 26/323 (8%) Strand=Plus/Minus Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 |||||| ||||| | || ||||||||| |||||||||||||||||||||||| | | Sbjct 59004 CTGGCGAAATGGAGCGATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGT 58945 Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACG-------------- 490 || ||| || |||||| |||||| ||| ||||||||| || | Sbjct 58944 GCAAGTATTAGGGTGTGGAAACCCAAATGCGCAATGAAAGTAAAGGACACATTAGTGTCT 58885 Query 491 GAGGTGGGAAC---CCGTGAGGGT----GCACCATCGACCGATCCTGATGTCTTCGGATG 543 | ||| |||| | || | ||| |||| ||||||||||| ||| || ||| || Sbjct 58884 GTGGTAGGAAGGAGCTGTAATGGTTCTGGCACTATCGACCGATCATGAAC-CTCCGGGTG 58826 Query 544 ---GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 58825 AAAGATTTGAGTATGAGCATATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAATA 58766 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 58765 GGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATC 58706 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||||| ||||||||||||| Sbjct 58705 GTCAAATTTAGGTATAGGGGCGA 58683 Score = 264 bits (292), Expect = 5e-68 Identities = 253/323 (78%), Gaps = 26/323 (8%) Strand=Plus/Minus Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 |||||| ||||| | || ||||||||| |||||||||||||||||||||||| | | Sbjct 73547 CTGGCGAAATGGAGCGATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGT 73488 Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACG-------------- 490 || ||| || |||||| |||||| ||| ||||||||| || | Sbjct 73487 GCAAGTATTAGGGTGTGGAAACCCAAATGCGCAATGAAAGTAAAGGACACATTAGTGTCT 73428 Query 491 GAGGTGGGAAC---CCGTGAGGGT----GCACCATCGACCGATCCTGATGTCTTCGGATG 543 | ||| |||| | || | ||| |||| ||||||||||| ||| || ||| || Sbjct 73427 GTGGTAGGAAGGAGCTGTAATGGTTCTGGCACTATCGACCGATCATGAAC-CTCCGGGTG 73369 Query 544 ---GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 73368 AAAGATTTGAGTATGAGCATATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAATA 73309 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 73308 GGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATC 73249 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||||| ||||||||||||| Sbjct 73248 GTCAAATTTAGGTATAGGGGCGA 73226 Score = 190 bits (210), Expect = 9e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||| |||||| || | || |||||||| | ||||||||||||| Sbjct 55077 GAGTCGAGTTGTTTGGGAATACAGCTCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 55018 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 55017 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 54958 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| ||||||||||||| || Sbjct 54957 AGAGAGTTAAAGAGTACCTGAAACTGTTGAAAGGGAACCG 54918 Score = 190 bits (210), Expect = 9e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||| |||||| || | || |||||||| | ||||||||||||| Sbjct 59460 GAGTCGAGTTGTTTGGGAATACAGCTCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 59401 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 59400 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 59341 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| ||||||||||||| || Sbjct 59340 AGAGAGTTAAAGAGTACCTGAAACTGTTGAAAGGGAACCG 59301 Score = 190 bits (210), Expect = 9e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||| |||||| || | || |||||||| | ||||||||||||| Sbjct 74003 GAGTCGAGTTGTTTGGGAATACAGCTCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 73944 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 73943 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 73884 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| ||||||||||||| || Sbjct 73883 AGAGAGTTAAAGAGTACCTGAAACTGTTGAAAGGGAACCG 73844 >seq444 Length=8335 Score = 241 bits (266), Expect = 5e-61 Identities = 253/335 (76%), Gaps = 37/335 (11%) Strand=Plus/Minus Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 |||||| ||||| | || ||||||||| |||||||||||||||||||||||| | | Sbjct 720 CTGGCGAAATGGAGCGATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGT 661 Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACGG------------- 491 || ||| || |||||| |||||| ||| |||||||||||| || Sbjct 660 GCAAGTATTAGGGTGTGGAAACCCAAATGCGCAATGAAAGTGAAGGGCAGCGTAAGTTGT 601 Query 492 ---AGGTGGGAACCCGTGAGGGT----------------GCACCATCGACCGATCCTGAT 532 |||| |||| || ||| |||| ||||||||||| ||| Sbjct 600 CTGAGGTAGGAAATGCTGCGGGCTTCGGTTTGCGGTGTGGCACTATCGACCGATCATGAA 541 Query 533 G-TC--TTCG-GATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAAC 588 || || | || |||||||||| ||||||| |||||| |||||||||||||||||| Sbjct 540 CCTCCGTTGGTGAAAGATTTGAGTATGAGCATATATGTTGGTACCCGAAAGATGGTGAAC 481 Query 589 TATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCG 648 |||||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||| || Sbjct 480 TATGCCTGAATAGGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACG 421 Query 649 TGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||| ||||||||||||| Sbjct 420 TGCAAATCGATCGTCAAATTTAGGTATAGGGGCGA 386 Score = 190 bits (210), Expect = 9e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||| |||||| || | || |||||||| | ||||||||||||| Sbjct 1254 GAGTCGAGTTGTTTGGGAATACAGCTCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 1195 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 1194 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 1135 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| ||||||||||||| || Sbjct 1134 AGAGAGTTAAAGAGTACCTGAAACTGTTGAAAGGGAACCG 1095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079982089250