Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq444 311 1e-82 seq238 288 2e-75 seq12 288 2e-75 seq253 223 6e-56 >seq444 Length=8335 Score = 311 bits (344), Expect = 1e-82 Identities = 220/249 (88%), Gaps = 7/249 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2714 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCC 2773 Query 77 AACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAG-CCAGCCACCAACCATAGT 133 ||||||| |||| | || | |||| ||||||||||||||| ||| |||| |||| | Sbjct 2774 AACTTCCTTTGGTTTGATTACCCAAAAGTCCCTCTAAGAAGTCCACACACCTACCAAAAA 2833 Query 134 CGATG----GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | | || |||||||||| | ||||||||||||||| ||||||||||||||||| Sbjct 2834 TGGTAAGCAGGACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAA 2893 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 2894 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCT 2953 Query 250 CAATCTGTC 258 ||||||||| Sbjct 2954 CAATCTGTC 2962 >seq238 Length=8787 Score = 288 bits (318), Expect = 2e-75 Identities = 213/245 (87%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2955 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCC 3014 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG- 135 ||||||| | | | | | | ||||||||||||||| | ||| |||| | | | Sbjct 3015 AACTTCCTTCAGTTAGTCACTGAAAGTCCCTCTAAGAAGTCCTT-ACCTACCAAATTGGT 3073 Query 136 ATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | || |||||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 3074 AAGCAGGACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 3133 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3134 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 3193 Query 254 CTGTC 258 ||||| Sbjct 3194 CTGTC 3198 >seq12 Length=1206637 Score = 288 bits (318), Expect = 2e-75 Identities = 213/245 (87%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60717 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCC 60776 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG- 135 ||||||| | | | | | | ||||||||||||||| | ||| |||| | | | Sbjct 60777 AACTTCCTTCAGTTAGTCACTGAAAGTCCCTCTAAGAAGTCCTT-ACCTACCAAATTGGT 60835 Query 136 ATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | || |||||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 60836 AAGCAGGACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 60895 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 60896 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 60955 Query 254 CTGTC 258 ||||| Sbjct 60956 CTGTC 60960 Score = 288 bits (318), Expect = 2e-75 Identities = 213/245 (87%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 75260 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCC 75319 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG- 135 ||||||| | | | | | | ||||||||||||||| | ||| |||| | | | Sbjct 75320 AACTTCCTTCAGTTAGTCACTGAAAGTCCCTCTAAGAAGTCCTT-ACCTACCAAATTGGT 75378 Query 136 ATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | || |||||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 75379 AAGCAGGACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 75438 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 75439 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 75498 Query 254 CTGTC 258 ||||| Sbjct 75499 CTGTC 75503 >seq253 Length=11029 Score = 223 bits (246), Expect = 6e-56 Identities = 183/219 (84%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCC 63 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG- 135 ||||||| | | | | | | ||||||||||||||| | ||| |||| | | | Sbjct 64 AACTTCCTTCAGTTAGTCACTGAAAGTCCCTCTAAGAAGTC-CTTACCTACCAAATTGGT 122 Query 136 ATG--GGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | || |||||||||| | ||||||||||||||| ||||||||||||||||||||| Sbjct 123 AAGCAGGACTATTTAGCACGCGGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 182 Query 194 CTCCACCAACTAAGAA----CGGCCATGCACCACCACCC 228 |||||||||||||||| ||||| ||||||||||||| Sbjct 183 CTCCACCAACTAAGAACGGCCGGCCGTGCACCACCACCC 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796793554635