Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq238 441 1e-121 seq70 387 2e-105 seq12 387 2e-105 seq132 242 6e-62 seq123 82.4 1e-13 >seq238 Length=8787 Score = 441 bits (488), Expect = 1e-121 Identities = 275/294 (94%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 |||||||| ||||||||||| | || |||||||||||||||||||||||||||||||| Sbjct 7992 TACTAAGCTCAATTACCATTGCGATGA-GGTCATCAGTAGGGTAAAACTAACCTGTCTCA 8050 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 8051 CGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACAATTGGCGA 8110 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 8111 ATTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGCTAT 8170 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 8171 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCCT 8230 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||||||||||||||||||||||||| ||||||| |||||| |||||||||||| Sbjct 8231 CAAATTTCGAGGGACTAAAGGATCGAGAGGCCACGCTTTCACGGTTTGTATTCA 8284 >seq70 Length=329858 Score = 387 bits (428), Expect = 2e-105 Identities = 244/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 241848 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 241907 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 241908 TTAGTGGGTGAACAATCCAACAATTGGCGAATTCTACTTCGCAATGATAGGAAGAGCCGA 241967 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241968 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 242027 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||| ||| Sbjct 242028 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCAAAAGAACTAAAGGATCGAGAGG 242087 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 242088 CCACGCTTTCACGGTTTGTATTCA 242111 >seq12 Length=1206637 Score = 387 bits (428), Expect = 2e-105 Identities = 244/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 71111 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 71170 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 71171 TTAGTGGGTGAACAATCCAACAATTGGCGAATTCTACTTCGCAATGATAGGAAGAGCCGA 71230 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71231 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 71290 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||| ||| Sbjct 71291 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCAAAAGAACTAAAGGATCGAGAGG 71350 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 71351 CCACGCTTTCACGGTTTGTATTCA 71374 Score = 365 bits (404), Expect = 8e-99 Identities = 240/264 (91%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 52186 TCATCAGTAATGTAAAACTAACC-GTCTCATGACGGTCTATCCCCAGCTCACGTTCCCTA 52244 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 52245 TTAGTGGGTGAACAATCCAACAATTGGCGAATTCTACTTCGCAATGATAGGAAGAGCCGA 52304 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52305 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 52364 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||| ||| Sbjct 52365 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCAAAAGAACTAAAGGATCGAGAGG 52424 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 52425 CCACGCTTTCACGGTTTGTATTCA 52448 >seq132 Length=116202 Score = 242 bits (268), Expect = 6e-62 Identities = 148/157 (94%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 109886 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 109827 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 109826 TTAGTGGGTGAACAATCCAACAATTGGCGAATTCTACTTCGCAATGATAGGAAGAGCCGA 109767 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 |||||||| |||||||||||||||||||||||||||| Sbjct 109766 CATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCT 109730 >seq123 Length=102884 Score = 82.4 bits (90), Expect = 1e-13 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCA 281 |||||| |||||||||| | ||||| | | ||||||||||||| ||||||| |||||| Sbjct 64070 TTTCTGACACCTCTAGCTTAAAATTCAAAAGAACTAAAGGATCGAGAGGCCACGCTTTCA 64011 Query 282 TGGTTTGTATTCA 294 |||||||||||| Sbjct 64010 CGGTTTGTATTCA 63998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854392865760