Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq13 131 2e-28 seq83 118 1e-24 seq40 73.4 4e-11 >seq13 Length=1183921 Score = 131 bits (144), Expect = 2e-28 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 725938 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 725879 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 725878 AGTTTATGTTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 725819 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 725818 GACAAGGAATTTCGCTACCTTAGGACCGT 725790 >seq83 Length=302471 Score = 118 bits (130), Expect = 1e-24 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| |||| | ||| ||||||||| | | | | ||||||| Sbjct 167290 GGTAGTCCGCATCTTCACGGATAATTCAAATTCACTGAGTTTATGTTGGAGACAGTGGGG 167231 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 167230 ATGTCGTTACACCATTCATGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAG 167171 Query 166 GA 167 || Sbjct 167170 GA 167169 >seq40 Length=520276 Score = 73.4 bits (80), Expect = 4e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 126 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 170 || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 484928 CATGTCGGAACTTACCCGACAAGGAATTTCGCTACGTTAGGACCG 484884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547195573665