Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq229 143 6e-32 seq16 132 1e-28 >seq229 Length=16518 Score = 143 bits (158), Expect = 6e-32 Identities = 169/220 (77%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCC 59 |||||||| || | | ||||||| ||| ||| || |||| |||||||| ||||||||| Sbjct 11468 CTTTACAA-CCTATTAGCCTTCTT-CACTCACTTGGTATTG-CTGGATCAAGCTTTCGCC 11412 Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||||||||||||| ||||||||||| | ||| ||| |||||||||||| ||| Sbjct 11411 CATTGTCCAATATTCCTCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCA 11353 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACC 177 |||| |||||||| || ||| | ||| || |||||| | |||||| || | || | | Sbjct 11352 ATGTGGCTGATCATTCTTTCAAATCAGCTAAAGATCGTAGGCTTGGTAAGTCTTTTAAAC 11293 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 | |||||||| |||||| | | |||||| |||||| Sbjct 11292 T-ACCAACTACCTAATCTTCCGCAAACTCATCCAATAGCG 11254 >seq16 Length=1313120 Score = 132 bits (146), Expect = 1e-28 Identities = 139/179 (78%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 ||||||||| ||||||||||||||||||||||||| ||||||||||| | ||| | Sbjct 530864 GCTGGATCAAGCTTTCGCCCATTGTCCAATATTCCTCACTGCTGCCT-TTAAAAAAGTTT 530922 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGC 160 || |||||||||||| ||| |||| |||||||| || ||| | ||| || |||||| | Sbjct 530923 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAATCAGCTAAAGATCGTAGG 530982 Query 161 CTTGGTGAGCCATT--ACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 |||||| || | || | || |||||||| |||||| | | |||||| |||||| Sbjct 530983 CTTGGTAAGTCTTTTAAACT-ACCAACTACCTAATCTTCCGCAAACTCATCCAATAGCG 531040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071991048800