Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq229 150 5e-34 seq16 132 1e-28 seq31 86.0 2e-14 >seq229 Length=16518 Score = 150 bits (166), Expect = 5e-34 Identities = 155/200 (78%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGG-CTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| ||||||||| ||| | ||||||||| | |||||| |||| || ||| | Sbjct 11277 GATTAGGTAGTTGGTAGTTTAAAAGACTTACCAAGCCTACGATCTTTAGCTGATTTGAAA 11336 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct 11337 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGA 11395 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 ||||||||| ||||||||| ||||| |||| |||||| || ||||| || |||||| Sbjct 11396 GGAATATTGGACAATGGGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAGAAGGCTA 11455 Query 346 TCGGGTCGTAAAGCTCTGTC 365 ||| |||||||||| || Sbjct 11456 ATAGGTTGTAAAGCTCTTTC 11475 >seq16 Length=1313120 Score = 132 bits (146), Expect = 1e-28 Identities = 125/157 (80%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGG-CTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| ||||||||| ||| | ||||||||| | |||||| |||| || ||| | Sbjct 531017 GATTAGGTAGTTGGTAGTTTAAAAGACTTACCAAGCCTACGATCTTTAGCTGATTTGAAA 530958 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct 530957 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACT-TTTTTAAAGGCAGCAGTGA 530899 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAA 322 ||||||||| ||||||||| ||||| |||| |||||| Sbjct 530898 GGAATATTGGACAATGGGCGAAAGCTTGATCCAGCAA 530862 >seq31 Length=638066 Score = 86.0 bits (94), Expect = 2e-14 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 349 GGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCT 408 ||| |||||||||| || | |||||||| || ||| |||||| | || ||| ||||| Sbjct 574072 GGTTGTAAAGCTCTTTCATTAAGGAAGAAAAAGACAGTACTTAAAAAG-AAGTTTCGGCT 574130 Query 409 AACTACGTGCCAGCAGCCGCGGTAATACG 437 || | |||||||||||||||||||||||| Sbjct 574131 AATTTCGTGCCAGCAGCCGCGGTAATACG 574159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497587495040