Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq444 273 4e-71 seq238 271 1e-70 seq12 271 1e-70 seq223 203 6e-50 seq253 134 3e-29 seq226 82.4 1e-13 >seq444 Length=8335 Score = 273 bits (302), Expect = 4e-71 Identities = 217/260 (83%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCT---CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| | || | ||| || | ||||||| |||||||||||||||||| Sbjct 2814 CTTCTTAGAGGGACTTTTGGGTAATCAAACCAAAGGAAGTTGGAGGCAATAACAGGTCTG 2755 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||||||||||||||||||||||||||| | |||||||| || Sbjct 2754 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGGTACGCTCAACGAGTATAT 2695 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || |||||||||||||||| | || | ||||||| |||||||| || Sbjct 2694 AACCTTGATCGATAGGTCTGGGTAATCTTTTGAATACGTATCGTGCTAGGGATAGATTAT 2635 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 |||||||||| |||| |||||||||| |||||||| ||| ||||||||| || |||| Sbjct 2634 TGCAATTATTAATCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGA 2575 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 2574 TTACGTCCCTGCCCTTTGTA 2555 >seq238 Length=8787 Score = 271 bits (300), Expect = 1e-70 Identities = 250/313 (80%), Gaps = 5/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGCCGGCTTCT 76 || |||||||| | |||||||||| | || || ||||| ||| | ||||| Sbjct 3107 GAACGAGACCTCCGCGTGCTAAATAGTCCTGCTTACCAATTTGGTAGGTAAG-GACTTCT 3049 Query 77 TAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| || | | | | || ||||||| ||||||||||||||||||||||||| Sbjct 3048 TAGAGGGACTTTCAGTGACTAACTGAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCC 2989 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 2988 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGGTACGCTCAACGAGTATATAACCTTG 2929 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 || |||||||||||||||| | || | ||||||| |||||||| ||||||||| Sbjct 2928 ATCGATAGGTCTGGGTAATCTTTTGAATACGTATCGTGCTAGGGATAGATTATTGCAATT 2869 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| |||| |||||||||| |||||||| ||| ||||||||| || ||||||||||| Sbjct 2868 ATTAATCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACGTC 2809 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 2808 CCTGCCCTTTGTA 2796 >seq12 Length=1206637 Score = 271 bits (300), Expect = 1e-70 Identities = 250/313 (80%), Gaps = 5/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGCCGGCTTCT 76 || |||||||| | |||||||||| | || || ||||| ||| | ||||| Sbjct 60869 GAACGAGACCTCCGCGTGCTAAATAGTCCTGCTTACCAATTTGGTAGGTAAG-GACTTCT 60811 Query 77 TAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| || | | | | || ||||||| ||||||||||||||||||||||||| Sbjct 60810 TAGAGGGACTTTCAGTGACTAACTGAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCC 60751 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 60750 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGGTACGCTCAACGAGTATATAACCTTG 60691 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 || |||||||||||||||| | || | ||||||| |||||||| ||||||||| Sbjct 60690 ATCGATAGGTCTGGGTAATCTTTTGAATACGTATCGTGCTAGGGATAGATTATTGCAATT 60631 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| |||| |||||||||| |||||||| ||| ||||||||| || ||||||||||| Sbjct 60630 ATTAATCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACGTC 60571 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 60570 CCTGCCCTTTGTA 60558 Score = 271 bits (300), Expect = 1e-70 Identities = 250/313 (80%), Gaps = 5/313 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGCCGGCTTCT 76 || |||||||| | |||||||||| | || || ||||| ||| | ||||| Sbjct 75412 GAACGAGACCTCCGCGTGCTAAATAGTCCTGCTTACCAATTTGGTAGGTAAG-GACTTCT 75354 Query 77 TAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| || | | | | || ||||||| ||||||||||||||||||||||||| Sbjct 75353 TAGAGGGACTTTCAGTGACTAACTGAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCC 75294 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 75293 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGGTACGCTCAACGAGTATATAACCTTG 75234 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 || |||||||||||||||| | || | ||||||| |||||||| ||||||||| Sbjct 75233 ATCGATAGGTCTGGGTAATCTTTTGAATACGTATCGTGCTAGGGATAGATTATTGCAATT 75174 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| |||| |||||||||| |||||||| ||| ||||||||| || ||||||||||| Sbjct 75173 ATTAATCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACGTC 75114 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 75113 CCTGCCCTTTGTA 75101 >seq223 Length=9840 Score = 203 bits (224), Expect = 6e-50 Identities = 162/195 (83%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 |||||||||||||||||||||||||||||||||||| | |||||||| || |||| Sbjct 1 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGGTACGCTCAACGAGTATATAACCT 60 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || || |||||||||||||||| | || | ||||||| |||||||| ||||||| Sbjct 61 TGATCGATAGGTCTGGGTAATCTTTTGAATACGTATCGTGCTAGGGATAGATTATTGCAA 120 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 ||||| |||| |||||||||| |||||||| ||| ||||||||| || ||||||||| Sbjct 121 TTATTAATCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACG 180 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 181 TCCCTGCCCTTTGTA 195 >seq253 Length=11029 Score = 134 bits (148), Expect = 3e-29 Identities = 124/154 (81%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGCCGGCTTCT 76 || |||||||| | |||||||||| | || || ||||| ||| | ||||| Sbjct 156 GAACGAGACCTCCGCGTGCTAAATAGTCCTGCTTACCAATTTGGTAGGTAAG-GACTTCT 98 Query 77 TAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| || | | | | || ||||||| ||||||||||||||||||||||||| Sbjct 97 TAGAGGGACTTTCAGTGACTAACTGAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCC 38 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 169 |||||||||||||||||||||||||||||||||| Sbjct 37 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTG 4 >seq226 Length=9547 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 266 AACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTT 325 |||||||||| |||||||| ||| ||||||||| || ||||||||||||||||||||| Sbjct 1 AACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACGTCCCTGCCCTTT 60 Query 326 GTA 328 ||| Sbjct 61 GTA 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947192090880