Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq238 670 0.0 seq70 609 8e-172 seq12 609 8e-172 seq10 147 7e-33 seq274 122 3e-25 seq143 105 2e-20 seq50 96.9 1e-17 seq40 91.5 5e-16 seq6 77.0 1e-11 >seq238 Length=8787 Score = 670 bits (742), Expect = 0.0 Identities = 435/476 (91%), Gaps = 5/476 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 8317 CTTTTGTTCTACATGAGATTTCTGTTCTCCATGAGCCCCCCTTAGGACACCTGCGTTATG 8376 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 8377 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGGTC 8436 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||||||||||||||||| |||||| ||| || || |||| |||||| ||||| Sbjct 8437 GGCCCGCGAAGGACCTTAAAACCAGAAGTTGGACGA--AAATCCAGCCCCGCTTAATTGA 8494 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 ||||||||||||| || |||| |||||||||||||||||| | |||||| |||| Sbjct 8495 ATAAGTAAAAAAACATTAGAAGTAGCGGTATTTCACTTGCGCCGGA---GCTCCCGCTTA 8551 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||| Sbjct 8552 TTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTC 8611 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 |||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||| Sbjct 8612 TTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATA 8671 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 8672 GGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATT 8731 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8732 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 8787 >seq70 Length=329858 Score = 609 bits (674), Expect = 8e-172 Identities = 461/538 (86%), Gaps = 18/538 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 242144 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAGGACACCTGTGTTATC 242203 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 242204 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 242263 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTTCCGCT 179 |||| || || ||| | | |||| || || || | |||| |||| Sbjct 242264 A-CCCGATAAATCGAGCTTCAATCTAGAACTGGGCACCCGCGAGGATGGCCAGG--CGCT 242320 Query 180 TCATTGAT----TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | ||||| ||||||||| ||| || |||| |||||||||||||||||| | Sbjct 242321 AC-TTGATGGGATAAGTAAAACAACATTAGAAGTAGCGGTATTTCACTTGCGCCGGA--- 242376 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 242377 GCTCCCGCTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 242436 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 242437 ACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 242496 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 242497 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 242556 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242557 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 242616 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 242617 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 242674 >seq12 Length=1206637 Score = 609 bits (674), Expect = 8e-172 Identities = 461/538 (86%), Gaps = 18/538 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 52481 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAGGACACCTGTGTTATC 52540 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 52541 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 52600 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTTCCGCT 179 |||| || || ||| | | |||| || || || | |||| |||| Sbjct 52601 A-CCCGATAAATCGAGCTTCAATCTAGAACTGGGCACCCGCGAGGATGGCCAGG--CGCT 52657 Query 180 TCATTGAT----TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | ||||| ||||||||| ||| || |||| |||||||||||||||||| | Sbjct 52658 AC-TTGATGGGATAAGTAAAACAACATTAGAAGTAGCGGTATTTCACTTGCGCCGGA--- 52713 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 52714 GCTCCCGCTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 52773 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 52774 ACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 52833 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 52834 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 52893 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 52894 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 52953 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 52954 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 53011 Score = 609 bits (674), Expect = 8e-172 Identities = 461/538 (86%), Gaps = 18/538 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 71407 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAGGACACCTGTGTTATC 71466 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 71467 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 71526 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTTCCGCT 179 |||| || || ||| | | |||| || || || | |||| |||| Sbjct 71527 A-CCCGATAAATCGAGCTTCAATCTAGAACTGGGCACCCGCGAGGATGGCCAGG--CGCT 71583 Query 180 TCATTGAT----TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | ||||| ||||||||| ||| || |||| |||||||||||||||||| | Sbjct 71584 AC-TTGATGGGATAAGTAAAACAACATTAGAAGTAGCGGTATTTCACTTGCGCCGGA--- 71639 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 71640 GCTCCCGCTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 71699 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 71700 ACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 71759 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 71760 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 71819 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71820 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 71879 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 71880 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 71937 Score = 517 bits (572), Expect = 4e-144 Identities = 394/460 (86%), Gaps = 18/460 (4%) Strand=Plus/Plus Query 85 CCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAG--GACCT 142 ||||||||||||||||||||||| ||||| || || | || |||| || || || Sbjct 56942 CCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCA-CCCGATAAATCGAGCT 57000 Query 143 TAACGCCAGAAAATGGT-----CGGTGAAGACCAGTTCCGCTTCATTGAT----TAAGTa 193 | | | |||| || || || | |||| |||| | ||||| |||||| Sbjct 57001 TCAATCTAGAACTGGGCACCCGCGAGGATGGCCAGG--CGCTAC-TTGATGGGATAAGTA 57057 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| ||| || |||| |||||||||||||||||| | |||||| ||||||||||| Sbjct 57058 AAACAACATTAGAAGTAGCGGTATTTCACTTGCGCCGGA---GCTCCCGCTTATTCTACA 57114 Query 254 CCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 57115 CCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 57174 Query 314 GCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAG 373 ||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 57175 GCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAG 57234 Query 374 TGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTAC 433 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 57235 TGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTAC 57294 Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 57295 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTT 57354 Query 494 GACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||||||||||||||| ||||||| Sbjct 57355 GACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 57394 Score = 96.9 bits (106), Expect = 1e-17 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 21 GAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTG 80 ||||||||||||||| |||| ||||| ||||| || ||||| ||||||||||||| Sbjct 56102 GAGATTTCTGTTCTCATTGAGCTTACCTTAAGACACGTGTGTTATCATTTAACAGATGTG 56161 Query 81 CCGCCCCAGCCAAACTCCCCA 101 ||||||||||||||||||||| Sbjct 56162 CCGCCCCAGCCAAACTCCCCA 56182 >seq10 Length=1517454 Score = 147 bits (162), Expect = 7e-33 Identities = 107/123 (87%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 || ||| |||||||||||||||||||| ||||||||||| | ||||||| |||| ||| Sbjct 355053 AACGTCAGACTAGAGTCAAGCTCAACAAGGTCTTCTTTCTC-GCTGATTTTTCCAATCCC 355111 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 |||||||||||| || |||| |||| |||||||| |||||||||||||||| ||||||| Sbjct 355112 GTTCCCTTGGCTATGAGTTCGATAGACAGTAGATAAGGACAGTGGGAATCTCATTAATCC 355171 Query 392 ATT 394 ||| Sbjct 355172 ATT 355174 >seq274 Length=12500 Score = 122 bits (134), Expect = 3e-25 Identities = 84/95 (88%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 12500 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAGGACACCTGTGTTATC 12441 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 12440 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 12406 >seq143 Length=84990 Score = 105 bits (116), Expect = 2e-20 Identities = 74/84 (88%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268 ||| |||||||||||||| ||||| |||||| ||||||||||||||| ||||||||| Sbjct 9952 TAGCGGTATTTCACTTGCACCGAA---GCTCCCGCTTATTCTACACCTCCTAAGTCATTT 10008 Query 269 CACAAAGTCGGACTAGAGTCAAGC 292 ||||| ||| |||||||||||||| Sbjct 10009 CACAACGTCAGACTAGAGTCAAGC 10032 >seq50 Length=486813 Score = 96.9 bits (106), Expect = 1e-17 Identities = 71/82 (87%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 213 GGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 |||||||||||||||||| | |||||| || |||||||||||| ||||||||||||| Sbjct 236360 GGTATTTCACTTGCGCCGGA---GCTCCCGCTAATTCTACACCTCCTAAGTCATTTCACA 236416 Query 273 AAGTCGGACTAGAGTCAAGCTC 294 | ||| ||||||||||||| || Sbjct 236417 ACGTCAGACTAGAGTCAAGATC 236438 >seq40 Length=520276 Score = 91.5 bits (100), Expect = 5e-16 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268 ||| |||||||||||||||||| | |||||| ||||||||||||||| ||||||||| Sbjct 370596 TAGCGGTATTTCACTTGCGCCGGA---GCTCCCGCTTATTCTACACCTCCTAAGTCATTT 370652 Query 269 CACAAAGTCGGACTAG 284 ||||| ||| |||||| Sbjct 370653 CACAACGTCAGACTAG 370668 >seq6 Length=1791376 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||||||||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 769325 GTAGATAGGGACAGTGGGAATCTCACGAATCCGTTCATGCGCGTCACTAGTTAGA 769271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635186346080