Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq238 230 4e-58 seq132 123 4e-26 seq70 123 4e-26 seq12 123 4e-26 >seq238 Length=8787 Score = 230 bits (254), Expect = 4e-58 Identities = 223/279 (80%), Gaps = 7/279 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| |||||||||||||||| |||| |||| |||||| Sbjct 7994 GTACGAGAGGAACCGCTCA-TTCAGA-TAATTGGTTTTTGCGGTTGTCCGACCGGGCAGT 7937 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 7936 GCCGCGACGCTACCATCTGCTGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 7877 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||||| | |||| | |||| |||| | |||| || ||| ||||||||| ||||| || | Sbjct 7876 GAACGCGATGATAC-CTCCAGCACGTTGTAGACGTATAAGAATAGGCTCCGGCCTCGTAT 7818 Query 181 CTTAGCAGGCCGGCAACGGGCG-TCCCGCGGAAGCGCGGGGCGCTCAGCTGGCGGATTGC 239 |||||||||| | | || | | |||| | ||| | | | ||| |||| Sbjct 7817 CTTAGCAGGC--GATTCCTCCGTTGGCCTTGAAGTGGCCAGCGGT-AATTCGCGTATTGT 7761 Query 240 AATTTCACCATGCGCAGGGATAAATCCTTTGCAGACGAC 278 ||||| | || |||| || |||||||||||||||||| Sbjct 7760 AATTTTAACACGCGCTGGATCAAATCCTTTGCAGACGAC 7722 >seq132 Length=116202 Score = 123 bits (136), Expect = 4e-26 Identities = 101/119 (85%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCG-CGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 ||||||||||||||| ||| |||||| |||||||| ||| | | |||| || || Sbjct 109916 GTACGAGAGGAACCGTCGG--TTCAGA-TAATTGGTAAATGCAGTTAGCTGAAAAGCTAG 109972 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 109973 TGCTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 110031 >seq70 Length=329858 Score = 123 bits (136), Expect = 4e-26 Identities = 101/119 (85%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCG-CGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 ||||||||||||||| ||| |||||| |||||||| ||| | | |||| || || Sbjct 241818 GTACGAGAGGAACCGTCGG--TTCAGA-TAATTGGTAAATGCAGTTAGCTGAAAAGCTAG 241762 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 241761 TGCTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 241703 >seq12 Length=1206637 Score = 123 bits (136), Expect = 4e-26 Identities = 101/119 (85%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCG-CGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 ||||||||||||||| ||| |||||| |||||||| ||| | | |||| || || Sbjct 71081 GTACGAGAGGAACCGTCGG--TTCAGA-TAATTGGTAAATGCAGTTAGCTGAAAAGCTAG 71025 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 71024 TGCTGCGAAGCTACCATCTGTAGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 70966 Score = 105 bits (116), Expect = 1e-20 Identities = 97/119 (82%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCG-CGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAG 59 ||||||| ||||||| ||| |||| | |||||||| ||| | | |||| || || Sbjct 52156 GTACGAGTGGAACCGTCGG--TTCATA-TAATTGGTAAATGCTGTTAGCTGAAAAGCTAG 52100 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGC 118 ||| |||||||||||||||| ||| |||||||||||||||| |||||||||||||||| Sbjct 52099 TGCTGCGAAGCTACCATCTGTAGGAATATGGCTGAACGCCTCAAAGTCAGAATCCATGC 52041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819193373440