Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq238 742 0.0 seq12 500 3e-139 seq444 495 1e-137 seq425 104 7e-20 seq17 104 7e-20 >seq238 Length=8787 Score = 742 bits (822), Expect = 0.0 Identities = 471/507 (93%), Gaps = 3/507 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCC-AAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 3912 GTACTCATTCCAATTACAAGACCCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 3971 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3972 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTAGTAGCCGT 4031 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||||||||| ||||||| |||| |||||| | ||||||||||||| ||||||| Sbjct 4032 TTCTCAGGCTCCTTCTCCGGGGTCGAGCCCTAACCCTCCGTTACCCGTTGTCACCATGGC 4091 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| | || || |||||||||||||||||||||||||||||||||||||||| || Sbjct 4092 TGGCCAAGACCCAGCCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGC 4151 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGG 299 ||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| Sbjct 4152 GCAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAGTTAGCCCCGAAGGGCATTGG 4211 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTA-GCATGTATTAGCTCT 358 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 4212 TTTTTAATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTATGCATGTATTAGCTCT 4271 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4272 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACTATAACTGATTTAAT 4331 Query 419 GAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||| | || || | ||||||| |||||||||||||||||||||||| Sbjct 4332 GAGCCATTCGCAGTTTCGCGGTTTAAAGTTGCTTAAACTTAGACATGCATGGCTTAATCT 4391 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 4392 TTGAGACAAGCATATGACTACTGGCAG 4418 >seq12 Length=1206637 Score = 500 bits (554), Expect = 3e-139 Identities = 421/511 (82%), Gaps = 18/511 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | |||| ||| ||||| | || |||||||||||||||||| Sbjct 61684 GTTCTCATTCCAATTGCCAGACT-AAATTAGCCCGGCATTGTTATTTATTGTCACTACCT 61742 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61743 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 61802 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||| Sbjct 61803 TCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAACGCCATGGTA 61862 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||| |||| |||||||||||||| | | || ||| ||| Sbjct 61863 GGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATC----GCT 61918 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGG 299 | ||||| | ||||||||||| ||| || | | | |||||| | |||| Sbjct 61919 TA-----GAGCGATCAGCACAGTTATTATGATTCAACACAAAATCACCGAAGTGAATTGG 61973 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||||| | ||| ||||| ||| ||| ||| ||||||||||| Sbjct 61974 -TTTCAATCTAATAAATGCTACCCGTCCGACAAGCAGTTGGGTATTTATGCATGTATTAG 62032 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||||| ||||||||||||| || | || || ||||||||| Sbjct 62033 CTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTGTCGAGTAGACTATAACTGATA 62092 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||| Sbjct 62093 TAATGAGCCATTCGCAGTTTCACAGTACAAAGTTGTTTATACTTAGACATGCATGGCTTA 62152 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| ||||||||||||||| Sbjct 62153 ATCTTTGAGACAAGCGTATGACTACTGGCAG 62183 Score = 500 bits (554), Expect = 3e-139 Identities = 421/511 (82%), Gaps = 18/511 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | |||| ||| ||||| | || |||||||||||||||||| Sbjct 76227 GTTCTCATTCCAATTGCCAGACT-AAATTAGCCCGGCATTGTTATTTATTGTCACTACCT 76285 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 76286 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 76345 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||| Sbjct 76346 TCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAACGCCATGGTA 76405 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||| |||| |||||||||||||| | | || ||| ||| Sbjct 76406 GGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATC----GCT 76461 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGG 299 | ||||| | ||||||||||| ||| || | | | |||||| | |||| Sbjct 76462 TA-----GAGCGATCAGCACAGTTATTATGATTCAACACAAAATCACCGAAGTGAATTGG 76516 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||||| | ||| ||||| ||| ||| ||| ||||||||||| Sbjct 76517 -TTTCAATCTAATAAATGCTACCCGTCCGACAAGCAGTTGGGTATTTATGCATGTATTAG 76575 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||||| ||||||||||||| || | || || ||||||||| Sbjct 76576 CTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTGTCGAGTAGACTATAACTGATA 76635 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||| Sbjct 76636 TAATGAGCCATTCGCAGTTTCACAGTACAAAGTTGTTTATACTTAGACATGCATGGCTTA 76695 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| ||||||||||||||| Sbjct 76696 ATCTTTGAGACAAGCGTATGACTACTGGCAG 76726 >seq444 Length=8335 Score = 495 bits (548), Expect = 1e-137 Identities = 427/519 (82%), Gaps = 21/519 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT--GTATCAGTATTTATTGTCACTAC 58 || |||||||||||| | |||| ||| ||||| | || |||||||||||||||| Sbjct 3760 GTTCTCATTCCAATTGCCAGACT-AAATTAGCCCGAAGCATTGTTATTTATTGTCACTAC 3818 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 3819 CTCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 3878 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||| Sbjct 3879 TTTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAACGCCATGG 3938 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC-CG 237 |||||| |||||||||||| |||| |||||||||||||| | | || ||||| | Sbjct 3939 TAGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATCGCGCA 3998 Query 238 GCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--G 292 || ||| ||||| || ||||||||||| ||| || | | | ||||||| Sbjct 3999 GCAAAAG----CGCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACT 4054 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCAT 347 || |||| ||| ||||||||||| | ||| ||||| ||| ||| ||| |||| Sbjct 4055 GCATTGG-TTTCAATCTAATAAATGCTACCCGTCCGACAAGCAGTTGGGTATTTATGCAT 4113 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||| ||||||||||| ||||||||||||| || | || || ||| Sbjct 4114 GTATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTGTCGAGTAGACTATA 4173 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGA--TTGCTTATACTTAGACATGC 465 |||||| ||||||||||||||||||||||| ||| | | || |||||||||||||||| Sbjct 4174 ACTGATATAATGAGCCATTCGCAGTTTCACAGTACAAAACGTGTTTATACTTAGACATGC 4233 Query 466 ATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| ||||||||||||||| Sbjct 4234 ATGGCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 4272 >seq425 Length=3815 Score = 104 bits (114), Expect = 7e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAATCAAACCC 60 Query 150 TAATT 154 || || Sbjct 61 TACTT 65 >seq17 Length=1039756 Score = 104 bits (114), Expect = 7e-20 Identities = 62/65 (95%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 79 TAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCG 138 ||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 105659 TAACTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCG 105718 Query 139 GAATC 143 ||||| Sbjct 105719 GAATC 105723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510387388160