Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F000520075.1_202014-01-14] 835 sequences; 75,844,385 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18 154 1e-32 seq2 149 5e-31 >seq18 Length=978767 Score = 154 bits (170), Expect = 1e-32 Identities = 575/887 (65%), Gaps = 27/887 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| |||||||| ||| || ||| ||| | ||| |||||||| || || || Sbjct 580360 CGGTTCGTGTTGTTCCCGATCCAGCATGCGGACGTGTGGGAAATGTACAAGAAAGCCGAG 580419 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || ||||||||| | ||||| |||| ||| | || | |||||| Sbjct 580420 GCGAGCTTCTGGACTGCCGAGGAACTCGACTTGGTGCACGATCAGCGCGACTGGATCAAG 580479 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 || ||| | || | ||||| | || ||| ||||||||||||| || ||| Sbjct 580480 TTGTCGGACAACGAGCGCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGAC 580539 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || |||||||| || || | || |||| ||| || | || |||||||| | || Sbjct 580540 GGCATCGTCAACGAAAACCTGGCCAT--GAAC-TTTAGC-AATGAAGTGCAAGTCCCCGA 580595 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 |||||| || || || || ||||| || ||||| || || |||||||||| ||||| Sbjct 580596 GGCGCGATGCTTTTATGGGTTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTACTC 580655 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | |||||||| || ||||||| ||| | | | || || || || | ||||| Sbjct 580656 GCTCCTCATCGACACATACATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCAT 580715 Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469 ||| || || ||| || | ||| || || | ||||| |||| ||| | || || Sbjct 580716 CGAAACCATTCCGTGCGTCATGCGCAAGGCCAACTGGGCGCTCAAGTGGTGCGACA--AC 580773 Query 61470 AA-CG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || || || | | | || || | | || || || | || || || | || ||| Sbjct 580774 AAGCGCGCCGCGTACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTC 580833 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||||| | | ||||||||| | ||||| || || || ||||| || ||| | Sbjct 580834 TCCGGTTCGTTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCG 580893 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT--TG 61644 ||| || || | || || |||||||| ||| |||| || || ||||| || || || Sbjct 580894 TTCTCGAACGAACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATG 580953 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | || || || | |||||| ||| | |||||||| | Sbjct 580954 -TACTCGA-----AGCTCGTCAACAAGCTGTCGGACACGCGCATCCACGAGATTGTCGGC 581007 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || ||||| || | ||| ||| || |||||||| |||||| ||| Sbjct 581008 GATGCCGTTGAGATCGAGAAGCAGTTTGTGAGCGAGAGCTTGCCCGTGGAACTCATTGGC 581067 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG--TCG 61822 ||||| | | || |||| | || ||||| || ||||| || || | | ||| Sbjct 581068 ATGAACTCGGCGCTCATGTGCGAATACATTGAGTTCTGCGCCGATCGCCTCCTCGAATCG 581127 Query 61823 ATTTG-GGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 || | | |||| ||| | | || ||||| ||||| | ||||||||||| Sbjct 581128 CTTGGCGCCCCCAAGC---TCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATC 581184 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || || | ||||| || || ||||||||||| || || ||||| || Sbjct 581185 TCATTGCAAGGCAAAACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 581231 >seq2 Length=2059303 Score = 149 bits (164), Expect = 5e-31 Identities = 256/367 (70%), Gaps = 6/367 (2%) Strand=Plus/Plus Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 ||||||||||||||||||| || |||| ||| ||||||||||| ||| | || || || | Sbjct 917937 CAAAGATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCC 917996 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | |||||||| ||||||||||| | |||||| || || | ||| || | || ||||| Sbjct 917997 CGCCTTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGT 918056 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTC 66607 | || || ||||| ||| ||| | | | | || || || || | ||| | ||| Sbjct 918057 TGGAGGACCCGTTGGTCCCG-CGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTC 918115 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||||| || || ||| ||| || ||| ||||| | || ||| | | || Sbjct 918116 ACGCCAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATA 918175 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 || || ||||| || |||| |||| || |||| |||| || ||||| || || Sbjct 918176 CCTTCGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGC 918235 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT--AATGGCGAGACATGTAAT 66785 ||| |||| ||| | ||| || || ||||| || |||| ||| || |||||||| | Sbjct 918236 GTGCCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAGTACAATTGC--GACATGTACT 918293 Query 66786 TGTACGT 66792 |||||| Sbjct 918294 CGTACGT 918300 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 |||||||||| || || | || || | |||||| || || | ||||| || Sbjct 917440 ACAAACTTGGACAGCGCGATGGACGCCAAGTTGCACACGGCCACTTCGTCCTTGCTCGTG 917499 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||||| || ||| ||||| || | || ||||||| ||||| || || Sbjct 917500 TACTCGATGATCTCGCAGCACAAGTTGGACGACTTGATCGTGCCCAGGTTCTGCTGGTTG 917559 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 ||||| ||||| ||||||||||||| ||||||||| |||||||| || ||||| ||| Sbjct 917560 GACTTGCCGTTGCACGCATCCTTGTACAGCATGTACGGCGTGCCGGTTTCGACTTGCGAC 917619 Query 66173 TCAATGATGGCG 66184 || | ||||||| Sbjct 917620 TCCAAGATGGCG 917631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563954124400