Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2068 264 5e-68 >seq2068 Length=15942 Score = 264 bits (292), Expect = 5e-68 Identities = 253/323 (78%), Gaps = 26/323 (8%) Strand=Plus/Plus Query 386 CTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTAT 445 |||||| ||||| | || ||||||||| |||||||||||||||||||||||| | | Sbjct 6156 CTGGCGAAATGGAGCGATACGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGT 6215 Query 446 GCGAGTGTTTGGGTGTC-AAACCCGTGCGCGTAATGAAAGTGAACG-------------- 490 || ||| || |||||| |||||| ||| ||||||||| || | Sbjct 6216 GCAAGTATTAGGGTGTGGAAACCCAAATGCGCAATGAAAGTAAAGGACACATTAGTGTCT 6275 Query 491 GAGGTGGGAAC---CCGTGAGGGT----GCACCATCGACCGATCCTGATGTCTTCGGATG 543 | ||| |||| | || | ||| |||| ||||||||||| ||| || ||| || Sbjct 6276 GTGGTAGGAAGGAGCTGTAATGGTTCTGGCACTATCGACCGATCATGAAC-CTCCGGGTG 6334 Query 544 ---GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATA 600 |||||||||| ||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 6335 AAAGATTTGAGTATGAGCATATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAATA 6394 Query 601 GGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATC 660 |||||||||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 6395 GGGTGAAGCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATC 6454 Query 661 GTCAAATTTGGGTATAGGGGCGA 683 ||||||||| ||||||||||||| Sbjct 6455 GTCAAATTTAGGTATAGGGGCGA 6477 Score = 190 bits (210), Expect = 9e-46 Identities = 138/160 (86%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||||||||||||||||| |||||| || | || |||||||| | ||||||||||||| Sbjct 5700 GAGTCGAGTTGTTTGGGAATACAGCTCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 5759 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 5760 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 5819 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| ||||||||||||| || Sbjct 5820 AGAGAGTTAAAGAGTACCTGAAACTGTTGAAAGGGAACCG 5859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079866559550