Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1981 250 6e-64 seq2200 125 2e-26 seq2512 73.4 1e-10 >seq1981 Length=16353 Score = 250 bits (276), Expect = 6e-64 Identities = 303/414 (73%), Gaps = 9/414 (2%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||| | | ||||||||||| | ||||| Sbjct 11405 GCATCTTCACGGATAATTCAAATTCACTGAGTTTATGTTGGAGACAGCGGGGATGTCGTT 11464 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 11465 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 11524 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 |||||||||||||||||| ||| ||| || | || || ||| | | Sbjct 11525 GAGTTACGGCCGCCGTTTACTGGGACTTTTATTCAATGC---------GCAAACATCTCC 11575 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 ||||| ||||| |||||||||||| |||| |||||||||||| ||| || || |||| Sbjct 11576 TATTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCATCTTACGATTTAGCAG 11635 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 ||| ||||||||||| |||||||||||| | || | | | | ||| | | || Sbjct 11636 AGTCCTGTGTTTTTATTAAACAGTCGCAACCCCCAATTCTGTGCCACCTTCTTATTATTT 11695 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || | | | || | | || | | ||||||||||||||| | | | |||||| Sbjct 11696 CGTCGATAAACATTTAAATAAAAAGGTACTCTTTCTCCCGAAGTTACAGAGTCATTTTGC 11755 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | ||||||||| | | || ||||| | |||| || | ||| ||| | |||| Sbjct 11756 CGAGTTCCTTCAACATAATTATCTCATACACCTTAGTCTACTCGACCTATCCAC 11809 >seq2200 Length=23142 Score = 125 bits (138), Expect = 2e-26 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | ||||| |||||||||| | | ||||||||| | | ||||| Sbjct 23088 GCATCTTCACGGATAATTCAAATTCACTGAGTTTATGTTGGAGACAGTGGGGATGTCGTT 23029 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || |||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 23028 ACACCATTCATGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 22975 >seq2512 Length=84864 Score = 73.4 bits (80), Expect = 1e-10 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 85 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 34594 CATGTCGGAACTTACCCGACAAGGAATTTCGCTACGTTAGGACCG 34638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260721565632