Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1981 214 5e-53 seq1292 91.5 4e-16 >seq1981 Length=16353 Score = 214 bits (236), Expect = 5e-53 Identities = 351/507 (69%), Gaps = 43/507 (8%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 14618 CGCAAGGTTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 14677 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| ||||| | ||||||||||| |||| || | | | | | | Sbjct 14678 TAATTCGACAATACGCGCAAAACCTTACCAATCCTTGTCAATATTT------TTAAAAAA 14731 Query 127 TAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTG 186 | | ||| | | | | ||||| | ||||||| ||||||||||||||| Sbjct 14732 TTAA--TTT------------AAAAAAT-ACAGGCGTTGCATGGCTGTCGTCAGCTCGTG 14776 Query 187 TCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC------ 240 | |||||||||| |||| | |||| |||||||| ||||| || ||| |||| Sbjct 14777 TTGTGAGATGTTTGGTTTATTCCCTTAACGAGCGAAACCCCTATTTTTAATTGCTAATTT 14836 Query 241 ---------CATCATTAAGTT--GGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGG 289 ||| ||| || | ||| || | | | | | ||| || Sbjct 14837 AGAATAAAAGATCTTTATTTTAAAAGTACTTTAGAAAAAAAGTTGATAATAAATTAACGG 14896 Query 290 AAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACA 349 |||||||||| ||||||| || ||||| |||||||| ||||||||||||||||||||| Sbjct 14897 AAGGTGGGGATTACGTCAAGTCTTCATGGCCCTTATGGATTGGGCTACACACGTGCTACA 14956 Query 350 ATGGACAATACAAAGGGCAGCGA----AACCGCGAGGTCAAGCAAATCCCATAAAGTTGT 405 ||| || |||| | | || | | | | ||||||| | |||| || Sbjct 14957 ATGATAAACACAATGAGAGGCAATAATTATAAAAAATTGGAGCAAAT-CTTTAAAATTTA 15015 Query 406 TCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGT 465 ||| |||||||||| | | |||||||||| | |||| ||| |||||||||||||||||| Sbjct 15016 TCTTAGTTCGGATTATGGGCTGCAACTCGCCCATATAAAGTTGGAATCGCTAGTAATCGC 15075 Query 466 AGATCAGCATGCTACGGTGAATACGTT 492 | | ||||||| | ||||||||| ||| Sbjct 15076 AAAACAGCATGTTGCGGTGAATATGTT 15102 >seq1292 Length=84758 Score = 91.5 bits (100), Expect = 4e-16 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 |||||||| ||| || | || |||||||||| | |||||||||||| | | || ||| Sbjct 933 AGCAAATCTTTAAAAATTAT-CTTAGTTCGGATTATGGTCTGCAACTCGCCCACATAAAG 991 Query 446 CTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 ||||||||||||||||| | | ||||||| | ||||||||| ||| Sbjct 992 TTGGAATCGCTAGTAATCTCAAAACAGCATGTTGCGGTGAATATGTT 1038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503906436160