Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq1981 131 2e-28 seq2200 118 1e-24 seq2512 73.4 4e-11 >seq1981 Length=16353 Score = 131 bits (144), Expect = 2e-28 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 11374 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 11433 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 11434 AGTTTATGTTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 11493 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 11494 GACAAGGAATTTCGCTACCTTAGGACCGT 11522 >seq2200 Length=23142 Score = 118 bits (130), Expect = 1e-24 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| |||| | ||| ||||||||| | | | | ||||||| Sbjct 23096 GGTAGTCCGCATCTTCACGGATAATTCAAATTCACTGAGTTTATGTTGGAGACAGTGGGG 23037 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 23036 ATGTCGTTACACCATTCATGCAGGTCAGAACTTACCCGACAAGGAATTTCGCTACCTTAG 22977 Query 166 GA 167 || Sbjct 22976 GA 22975 >seq2512 Length=84864 Score = 73.4 bits (80), Expect = 4e-11 Identities = 43/45 (96%), Gaps = 0/45 (0%) Strand=Plus/Plus Query 126 CAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 170 || |||||||||||||||||||||||||||||||| ||||||||| Sbjct 34594 CATGTCGGAACTTACCCGACAAGGAATTTCGCTACGTTAGGACCG 34638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167022479