Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1981 127 7e-27 seq373 84.2 8e-14 >seq1981 Length=16353 Score = 127 bits (140), Expect = 7e-27 Identities = 356/537 (66%), Gaps = 22/537 (4%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| | ||| ||||| || | |||||||| | |||||||||| Sbjct 12567 ATTCGGAGTTTCTAAAAGTTCAGTAAGATTTTAACCCCCCTAGCTTAATGAGTGCTCTAC 12626 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | | || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 12627 CCCAAAAAAAGATCTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 12686 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 |||||||||||||||||||||||| |||| |||||||| | || | || || || Sbjct 12687 TGAGTTTGATTGGCCTTTCACCCCTAATCACAAATCATCCCCGTATATTGCCACATACGT 12746 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 ||||||| ||||||| || ||||| |||||| ||| ||| ||||||||| Sbjct 12747 GGGTTCGATCCTCCAAATAGTTTTACCTATTCTTCAATCTGTTCATAATTAGATCACTCA 12806 Query 296 GCTTCGGGTCTTGATCGTGCCAC---TCATACGCCCTATTCGGACTCGCTTTCGCTACGG 352 | |||||||||| | | || | ||| | | | || ||| | |||| ||||| Sbjct 12807 GTTTCGGGTCTTATTTTTATAACTTATTATAAG-CTTTTTAAAACTTGATTTCTCTACGC 12865 Query 353 CTA--CCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 ||| | |||| || || | | || ||||| || ||| |||| | |||| Sbjct 12866 CTATTTTTTTTATAAATTAAGCTTGCTA-AAAAAATAAACTTGCTGGCCCATTATGCAAA 12924 Query 411 AGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATG 470 ||| || | ||||| | || ||||| |||| | | |||| | ||| | Sbjct 12925 AGGTACACTGTCACTT--TA--TAAAA-------AAGCTTCAATTGATTATTAGCATAGA 12973 Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 |||||| | | ||||||| | || || || |||||||||||| | || |||||| Sbjct 12974 GTTTCA-GAATTATTTCA-AACTCGAAAGCTCTA--TTTCACCTTTCCTTTACAGTACTT 13029 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 || | |||||||||| || | | | ||| || |||||||||| | | ||||| Sbjct 13030 GTTCACTATCGGTCATTAATTATTTTATAGATTTTGAGGGTGGTCCCCCAATATTCA 13086 >seq373 Length=5890 Score = 84.2 bits (92), Expect = 8e-14 Identities = 112/156 (72%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 152 ATTTCGGGGAGAACCAGCTA-----TCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 |||||| ||| ||||||||| || | ||||||||| |||||||||||||| ||| Sbjct 4735 ATTTCGCGGAAAACCAGCTACTGTATCTCTGAGTTTGATTTGCCTTTCACCCCTAATCAC 4676 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 | |||||||| | || | || || |||||||| ||||||| || ||||| Sbjct 4675 AAATCATCCCCGTATATTGCCACATACTTGGGTTCGATCCTCCAAATAGTTTTACCTATT 4616 Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGG 302 |||||| ||| || ||||||||| | ||||| Sbjct 4615 CTTCAATCTGTTCAAAATTAGATCACTCAGTTTCGG 4580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817486927104