Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1981 129 1e-27 seq1629 82.4 2e-13 >seq1981 Length=16353 Score = 129 bits (142), Expect = 1e-27 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| |||||||||| ||| || || |||| |||| |||| ||||||| Sbjct 14174 CTTTACAACCTATTAGCCTTCTTCACTCACTTGGTATTGCTGGATCAAGCTTTCGCCCAT 14115 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| ||||||||||| | ||| ||| |||||||||||| ||| || Sbjct 14114 TGTCCAATATTCCTCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATG 14056 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT-GGGCCATTACCCCGC 182 |||||| |||| || ||| | |||||| |||||| | || ||| | | ||| | | Sbjct 14055 TGGCTGATCATTCTTTCAAATCAGCTAAAGATCGTAGGCTTGGTAAGTCTTTTAAACTAC 13996 Query 183 CAACTAGCTAATC 195 |||||| |||||| Sbjct 13995 CAACTACCTAATC 13983 >seq1629 Length=1164 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| |||||||||| ||| || || |||| |||| |||| ||||||| Sbjct 1077 CTTTACAACCTATTAGCCTTCTTCACTCACTTGGTATTGCTGGATCAAGCTTTCGCCCAT 1136 Query 64 TGTGCAATATTCCCCACTGCTGCCT 88 ||| ||||||||| ||||||||||| Sbjct 1137 TGTCCAATATTCCTCACTGCTGCCT 1161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222323954496