Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1981 140 8e-31 >seq1981 Length=16353 Score = 140 bits (154), Expect = 8e-31 Identities = 243/344 (71%), Gaps = 12/344 (3%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||| | | |||| |||||||| | |||||||||||||||||||||||| || || Sbjct 14203 TACTTAAAAAAGAAGTTCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGAGC 14262 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||| |||| || ||| | | |||||||||||| |||||| |||| |||||| | Sbjct 14263 GAGCATTATTCGAAATGATTAGGCGTAAAGGGTTTGTAGGTTGTTTTTTAAGTTGAAAAA 14322 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTT---GAAACTGCAGGGCT-AGAGT-GCA 175 ||| || ||| || | ||| ||||| ||||| || ||||| | Sbjct 14323 AAAAAATTAGAGCTTAA---CTTTACTTCTTTTTTCAAAACTAATAAACTAAGAGTATAA 14379 Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAAT-GCGTAGATATTAGGAGGAACAC 234 || || | | |||||| || |||| | | |||| ||| ||| || |||||| Sbjct 14380 ATAGAGGATAATAGAATTCTTATTGTAAGGATAAAATCTTGTA-ATAATAAGAGGAATTT 14438 Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAG 293 |||||||||| | |||| | || |||||||||||| ||||||| |||| || Sbjct 14439 TCATGGCGAAGGCAATTATCTGG-GTATATACTGACACTGAGAAACGAAAGCTTGGGTAG 14497 Query 294 CAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||| ||||||||||||| ||||||||| || ||||||||||| Sbjct 14498 CGAACGGGATTAGATACCCCGGTAGTCCATGCTGTAAACGATGA 14541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203125148928