Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1981 141 3e-31 seq373 86.0 2e-14 >seq1981 Length=16353 Score = 141 bits (156), Expect = 3e-31 Identities = 309/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||| ||| ||||| ||||| || |||| Sbjct 12817 AGACCCGAAACTGAGTGATCTAATTATGAACAGATTGAAGAATAGGTAAAACTATTTGGA 12758 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||||||| |||| | || || |||||||| |||| |||||||||||||| Sbjct 12757 GGATCGAACCCACGTATGTGGCAATATACGGGGATGATTTGTGATTAGGGGTGAAAGGCC 12698 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTAT 212 || |||||| || |||||||||| || ||||| ||||| | |||| || | || || Sbjct 12697 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAGAT 12638 Query 213 CACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGA-CTTACCAAACCATT 271 | | ||||||||||||| | ||||||||| || | ||||| ||| || Sbjct 12637 CTTTTTTTGGGGTAGAGCACTCATTAAGCTAGGGGG--GTTAAAATCTTACTGAACTTTT 12580 Query 272 GCAAACTCCGAATGC--GCATCAGT-TTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGT 328 ||||||||||| | || ||| |||| || || |||| |||||||| Sbjct 12579 AGAAACTCCGAATACAAAAATAAGTATTTA----AATAGACAGACATTGGGCGCTAAGGT 12524 Query 329 CCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGA-CAGCTAAG 387 || | ||||||| || | || || | ||||||| || |||| | ||||| Sbjct 12523 CCATTGTCGAGAGGGAAACAGCCCAGATTGAACGCTAAGGTCCTTAAATAATTTTCTAAG 12464 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | | | || ||||| | | |||| | | | || |||||||||||||||| || Sbjct 12463 TGAGA--AAGGAAGTGAAAAAATAATGACAACCAACAGGTAGGCTTGGAAGCAGCCA-TC 12407 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 12406 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 12374 >seq373 Length=5890 Score = 86.0 bits (94), Expect = 2e-14 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 38 CCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTC 97 ||||||| ||||||||| || ||| ||||| ||||| || |||||| Sbjct 4580 CCGAAACTGAGTGATCTAATTTTGAACAGATTGAAGAATAGGTAAAACTATTTGGAGGAT 4639 Query 98 CGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAAC 157 |||||||| |||| | || || |||||||| |||| |||||||||||||| || | Sbjct 4640 CGAACCCAAGTATGTGGCAATATACGGGGATGATTTGTGATTAGGGGTGAAAGGCAAATC 4699 Query 158 AAACTTGGA-----AATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC-CTCAAGTA 211 ||||| || | ||||||||| || ||||| ||||| | |||| || | || | Sbjct 4700 AAACTCAGAGATACAGTAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAGA 4759 Query 212 TCACCATCGGGGGTAGAGCACT 233 || | ||||||||||||| Sbjct 4760 TCTTTTTTTGGGGTAGAGCACT 4781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689494889984