Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2068 609 8e-172 seq2232 147 7e-33 seq45 113 1e-22 seq528 105 2e-20 seq2517 96.9 1e-17 seq4158 91.5 5e-16 seq5830 77.0 1e-11 >seq2068 Length=15942 Score = 609 bits (674), Expect = 8e-172 Identities = 461/538 (86%), Gaps = 18/538 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| |||||||||||||| ||||| Sbjct 8296 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAGGACACCTGTGTTATC 8237 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||| ||||| || || | || Sbjct 8236 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTC 8177 Query 127 GGCCCGCGAAG--GACCTTAACGCCAGAAAATGGT-----CGGTGAAGACCAGTTCCGCT 179 |||| || || ||| | | |||| || || || | |||| |||| Sbjct 8176 A-CCCGATAAATCGAGCTTCAATCTAGAACTGGGCACCCGCGAGGATGGCCAGG--CGCT 8120 Query 180 TCATTGAT----TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 | ||||| ||||||||| ||| || |||| |||||||||||||||||| | Sbjct 8119 AC-TTGATGGGATAAGTAAAACAACATTAGAAGTAGCGGTATTTCACTTGCGCCGGA--- 8064 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||| ||||||||||||||| |||||||||||||| ||| ||||||||||||||||| Sbjct 8063 GCTCCCGCTTATTCTACACCTCCTAAGTCATTTCACAACGTCAGACTAGAGTCAAGCTCA 8004 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 8003 ACAGGGTCTTCTTTCCCCGCTGATTTTTCCAAGCCCGTTCCCTTGGCTGTGGGTTCGCTA 7944 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 7943 GACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATTCATGCGCGTCACTAGTTAGAT 7884 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7883 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 7824 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 7823 GTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACA 7766 >seq2232 Length=9429 Score = 147 bits (162), Expect = 7e-33 Identities = 107/123 (87%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 || ||| |||||||||||||||||||| ||||||||||| | ||||||| |||| ||| Sbjct 8963 AACGTCAGACTAGAGTCAAGCTCAACAAGGTCTTCTTTCTC-GCTGATTTTTCCAATCCC 9021 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 |||||||||||| || |||| |||| |||||||| |||||||||||||||| ||||||| Sbjct 9022 GTTCCCTTGGCTATGAGTTCGATAGACAGTAGATAAGGACAGTGGGAATCTCATTAATCC 9081 Query 392 ATT 394 ||| Sbjct 9082 ATT 9084 >seq45 Length=2487 Score = 113 bits (124), Expect = 1e-22 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| ||||| ||||| || ||||| Sbjct 121 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTTACCTTAAGACACGTGTGTTATC 180 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 181 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 215 >seq528 Length=3836 Score = 105 bits (116), Expect = 2e-20 Identities = 74/84 (88%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268 ||| |||||||||||||| ||||| |||||| ||||||||||||||| ||||||||| Sbjct 2000 TAGCGGTATTTCACTTGCACCGAA---GCTCCCGCTTATTCTACACCTCCTAAGTCATTT 2056 Query 269 CACAAAGTCGGACTAGAGTCAAGC 292 ||||| ||| |||||||||||||| Sbjct 2057 CACAACGTCAGACTAGAGTCAAGC 2080 >seq2517 Length=53399 Score = 96.9 bits (106), Expect = 1e-17 Identities = 71/82 (87%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 213 GGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACA 272 |||||||||||||||||| | |||||| || |||||||||||| ||||||||||||| Sbjct 502 GGTATTTCACTTGCGCCGGA---GCTCCCGCTAATTCTACACCTCCTAAGTCATTTCACA 558 Query 273 AAGTCGGACTAGAGTCAAGCTC 294 | ||| ||||||||||||| || Sbjct 559 ACGTCAGACTAGAGTCAAGATC 580 >seq4158 Length=30255 Score = 91.5 bits (100), Expect = 5e-16 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 209 TAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268 ||| |||||||||||||||||| | |||||| ||||||||||||||| ||||||||| Sbjct 7520 TAGCGGTATTTCACTTGCGCCGGA---GCTCCCGCTTATTCTACACCTCCTAAGTCATTT 7464 Query 269 CACAAAGTCGGACTAG 284 ||||| ||| |||||| Sbjct 7463 CACAACGTCAGACTAG 7448 >seq5830 Length=10132 Score = 77.0 bits (84), Expect = 1e-11 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||||||||||||||||||| ||||| |||||||||||||||| ||||| Sbjct 2236 GTAGATAGGGACAGTGGGAATCTCACGAATCCGTTCATGCGCGTCACTAGTTAGA 2290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635098274208