Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20astaci_20[genbank_20GCA_5F002197585.1_202017-06-16] 6,221 sequences; 51,796,608 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1997 154 1e-32 seq2971 145 6e-30 >seq1997 Length=17169 Score = 154 bits (170), Expect = 1e-32 Identities = 575/887 (65%), Gaps = 27/887 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| |||||||| ||| || ||| ||| | ||| |||||||| || || || Sbjct 6400 CGGTTCGTGTTGTTCCCGATCCAGCATGCGGACGTGTGGGAAATGTACAAGAAAGCCGAG 6341 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || ||||||||| | ||||| |||| ||| | || | |||||| Sbjct 6340 GCGAGCTTCTGGACTGCCGAGGAACTCGACTTGGTGCACGATCAGCGCGACTGGATCAAG 6281 Query 61174 TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGAC 61233 || ||| | || | ||||| | || ||| ||||||||||||| || ||| Sbjct 6280 TTGTCGGACAACGAGCGCTTCTTCATCACGCACGTGCTGGCGTTCTTTGCTGCGAGCGAC 6221 Query 61234 GGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGA 61289 || |||||||| || || | || |||| ||| || | || |||||||| | || Sbjct 6220 GGCATCGTCAACGAAAACCTGGCCAT--GAAC-TTTAGC-AATGAAGTGCAAGTCCCCGA 6165 Query 61290 GGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAG 61349 |||||| || || || || ||||| || ||||| || || |||||||||| ||||| Sbjct 6164 GGCGCGATGCTTTTATGGGTTCCAAATCGCCATCGAAAACATCCACTCGGAAGTGTACTC 6105 Query 61350 TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCAT 61409 | |||||||| || ||||||| ||| | | | || || || || | ||||| Sbjct 6104 GCTCCTCATCGACACATACATCAAGGACCCGACCGAGAAGGACCGCGTGCTGCGCGCCAT 6045 Query 61410 CGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTAC 61469 ||| || || ||| || | ||| || || | ||||| |||| ||| | || || Sbjct 6044 CGAAACCATTCCGTGCGTCATGCGCAAGGCCAACTGGGCGCTCAAGTGGTGCGACA--AC 5987 Query 61470 AA-CG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTC 61527 || || || | | | || || | | || || || | || || || | || ||| Sbjct 5986 AAGCGCGCCGCGTACGCCGAGCGCATCGTCGCGTTCGCCGCCGTGGAAGGCATCTTCTTC 5927 Query 61528 AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACC 61587 || ||||| | | ||||||||| | ||||| || || || ||||| || ||| | Sbjct 5926 TCCGGTTCGTTCTGCTCCATCTTTTGGCTCAAGAAGCGCGGGCTCATGCCGGGCCTGTCG 5867 Query 61588 TTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TGTTT--TG 61644 ||| || || | || || |||||||| ||| |||| || || ||||| || || || Sbjct 5866 TTCTCGAACGAACTCATCTCGCGCGACGAAGGCCTGCACTGCGACTTTGCATGCTTGATG 5807 Query 61645 CTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGT 61704 || || | | || || || | |||||| ||| | |||||||| | Sbjct 5806 -TACTCGA-----AGCTCGTCAACAAGCTGTCGGACACGCGCATCCACGAGATTGTCGGC 5753 Query 61705 GAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGC 61764 || || || ||||| || | ||| ||| || |||||||| |||||| ||| Sbjct 5752 GATGCCGTTGAGATCGAGAAGCAGTTTGTGAGCGAGAGCTTGCCCGTGGAACTCATTGGC 5693 Query 61765 ATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG--TCG 61822 ||||| | | || |||| | || ||||| || ||||| || || | | ||| Sbjct 5692 ATGAACTCGGCGCTCATGTGCGAATACATTGAGTTCTGCGCCGATCGCCTCCTCGAATCG 5633 Query 61823 ATTTG-GGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881 || | | |||| ||| | | || ||||| ||||| | ||||||||||| Sbjct 5632 CTTGGCGCCCCCAAGC---TCTTTGCGGCCAAGAACCCCTTTGACTGGATGGACATGATC 5576 Query 61882 TCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || || | ||||| || || ||||||||||| || || ||||| || Sbjct 5575 TCATTGCAAGGCAAAACCAACTTTTTCGAGAAGCGCGTGGGCGAGTA 5529 >seq2971 Length=8032 Score = 145 bits (160), Expect = 6e-30 Identities = 255/367 (69%), Gaps = 6/367 (2%) Strand=Plus/Minus Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 ||||||||||||||||||| || |||| ||| ||||||||||| ||| | || || || | Sbjct 3207 CAAAGATGTCGGCATGCCAAGGCTCCAAGTACATGGCGAACGACCCCTTGCGCTTTCCCC 3148 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | || ||||| ||||||||||| | |||||| || || | ||| || | || ||||| Sbjct 3147 CGCCCTGGTCCACGTAGCGAGCAGTGTCGTTGAACACCCGAAGCATGGGAATGATCCCGT 3088 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTC 66607 | || || ||||| ||| ||| | | | | || || || || | ||| | ||| Sbjct 3087 TGGAGGACCCGTTGGTCCCG-CGAATGTAGCTGTTGGTGGCGCGGATGTTGTGGATGTTC 3029 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||||| || || ||| ||| || ||| ||||| | || ||| | | || Sbjct 3028 ACGCCAATGCCGCCAGCCCACTTGGAAATGCACGCACAGTTCTTCAATGTGTCGTAGATA 2969 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 || || ||||| || |||| |||| || |||| |||| || ||||| || || Sbjct 2968 CCTTCGATGGAATCGTCCTTCATGGACAAGAGGAAGCACGACGACAGTTGAGGACGAGGC 2909 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGT--AATGGCGAGACATGTAAT 66785 ||| |||| ||| | ||| || || ||||| || |||| ||| || |||||||| | Sbjct 2908 GTGCCGGCGTTGAACAAGGTCGGGGTCGCGTGGGTGAAGTACAATTGC--GACATGTACT 2851 Query 66786 TGTACGT 66792 |||||| Sbjct 2850 CGTACGT 2844 Score = 93.3 bits (102), Expect = 3e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 66089 ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTAC 66148 || ||||||| ||||| || || ||||| ||||| ||||||||||||| ||||||| Sbjct 3608 ATCGTGCCCAGGTTCTGCTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAGCATGTAC 3549 Query 66149 GGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || |||||||| || ||||| ||||| | ||||||| Sbjct 3548 GGCGTGCCGGTTTCGACTTGCGACTCCAAGATGGCG 3513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397537857015440