Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq277 259 7e-67 seq4 86.0 9e-15 >seq277 Length=2894 Score = 259 bits (286), Expect = 7e-67 Identities = 197/229 (86%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| || |||| ||||||| ||| |||||||||||| | Sbjct 2539 GTACAAAGGGCAGGGACGTAATCAATGCAAGCT-GATGACTTGCGTTTACTAGGAATT-C 2482 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || ||||||||| ||||||||| | |||||| |||||| |||| Sbjct 2481 CTCGTTCAAGATTAATAATTGCAATAATCTATCCCTAGCACGATACGTATTCAAAAGATT 2422 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||| |||||| ||| ||||||||| | |||||||||||||||||| Sbjct 2421 ACCCAGACCTATCGATCAAGGTTATATACTCGTTGAGCGTACCAGTGTAGCGCGCGTGCG 2362 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2361 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCCAACTTCC 2313 >seq4 Length=2763071 Score = 86.0 bits (94), Expect = 9e-15 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 24 AACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCA 83 || || |||| ||||||| ||| |||||||||| ||||||||| ||| || ||||||| Sbjct 957448 AATGCAAGCT-GATGACTTGCGTTTACTAGGAA-TTCCTCGTTCAAGTTTAATAATTGCA 957391 Query 84 ATGATCTATCCCCATCACGAT-GAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTG 142 || ||||||||| |||||| ||| ||||||||||| |||| || ||| || Sbjct 957390 ATAATCTATCCCTTGCACGATACGTATTCAAAAGATTACCCAGACCAAACGAACAA-GTT 957332 Query 143 ATAGACTCGTTGA 155 | | ||||||||| Sbjct 957331 AAATACTCGTTGA 957319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751996495915