Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq99 167 7e-39 seq280 107 6e-21 seq11 95.1 4e-17 seq60 87.8 5e-15 seq281 86.0 2e-14 seq34 86.0 2e-14 >seq99 Length=106554 Score = 167 bits (184), Expect = 7e-39 Identities = 253/360 (70%), Gaps = 24/360 (7%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||| | ||||||| |||||||||||||||| |||||||||| |||| | |||| ||| Sbjct 63642 ACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAGATGTTTGGTTTATTCCCTTAAC 63701 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCA-----TCATTAAG------TTGG-------GCA 257 ||||| ||||| || ||| |||| | |||| || || | | Sbjct 63702 GAGCGAAACCCCTATTTTTAATTGCTAATTTATCATAAAAAGATCTTTATAATAAAAGTA 63761 Query 258 CTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATG 317 || ||| | | | | ||| |||||||||||| ||||||| || ||||| Sbjct 63762 CTTTAAAAAAAAAGTTAATAATAAATTAACGGAAGGTGGGGATTACGTCAAGTCTTCATG 63821 Query 318 CCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCG 377 |||||||| |||||||||||||||||||||||| ||||||| | | || | | Sbjct 63822 GCCCTTATGGATTGGGCTACACACGTGCTACAATGATAAATACAATGAGAGGCAATAATT 63881 Query 378 CGAGGTCAA-----GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACT 432 | || ||||||| |||| || ||| |||||||||| | | |||||||| Sbjct 63882 ATAAAAAAATTGGAGCAAATCTT-TAAAATTTATCTTAGTTCGGATTATGGGCTGCAACT 63940 Query 433 CGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 || | |||| ||| |||||||||||||||||| | | ||||||| | ||||||||| ||| Sbjct 63941 CGCCCATATAAAGTTGGAATCGCTAGTAATCGCAAAACAGCATGTTGCGGTGAATATGTT 64000 Score = 123 bits (136), Expect = 7e-26 Identities = 139/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 313 TCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGA 372 ||||| |||||||| |||||||||||||||||||||||| ||||||| | | || | Sbjct 51082 TCATGGCCCTTATGGATTGGGCTACACACGTGCTACAATGATAAATACAATGAGAGGCAA 51141 Query 373 AACCGCGAGGTCAA-----GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTG 427 | | || ||||||| |||| || ||| |||||||||| | | ||| Sbjct 51142 TAATTATAAAAAAATTGGAGCAAATCTT-TAAAATTTATCTTAGTTCGGATTATGGGCTG 51200 Query 428 CAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 ||||||| | |||| ||| |||||||||||||||||| | | ||||||| | |||||||| Sbjct 51201 CAACTCGCCCATATAAAGTTGGAATCGCTAGTAATCGCAAAACAGCATGTTGCGGTGAAT 51260 Query 488 ACGTT 492 | ||| Sbjct 51261 ATGTT 51265 >seq280 Length=14932 Score = 107 bits (118), Expect = 6e-21 Identities = 82/97 (85%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 643 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 584 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| | ||||||||||| |||| Sbjct 583 TAATTCGACAATACGCGCAAAACCTTACCAATCCTTG 547 >seq11 Length=1510989 Score = 95.1 bits (104), Expect = 4e-17 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||| | |||||| ||||||||||||||| | | ||||||||||||||||||||| | Sbjct 711724 CGCATGATTGAAATTCAAAGGAATTGACGAGAGTCTACACAAGCGGTGGAGCATGTGGAT 711783 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTG 103 |||||||| ||||| | ||||||||||| |||| Sbjct 711784 TAATTCGACAATACGCGCAAAACCTTACCAATCCTTG 711820 >seq60 Length=382306 Score = 87.8 bits (96), Expect = 5e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||| ||||||||||||||||| | ||||||||||||||||||||||| Sbjct 20268 CGCAAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTT 20209 Query 67 TAATTCGA 74 ||||| || Sbjct 20208 TAATTTGA 20201 >seq281 Length=9802 Score = 86.0 bits (94), Expect = 2e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||| | ||||||| |||||||||||||||| |||||||||| |||| | |||| ||| Sbjct 7960 ACAGGCGTTGCATGGCTGTCGTCAGCTCGTGTTGTGAGATGTTTGGTTTATTCCCTTAAC 8019 Query 216 GAGCGCAACCCTTAAGCTTAGTTGC 240 ||||| ||||| || ||| |||| Sbjct 8020 GAGCGAAACCCCTATTTTTAATTGC 8044 >seq34 Length=643442 Score = 86.0 bits (94), Expect = 2e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 10 AAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAA 69 ||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||| Sbjct 55214 AAGATTGAAATTCAAAGGAATTGACGGGAGTCTACACAAGCGGTGGAGCATGTGGTTTAA 55273 Query 70 TTCGA 74 ||||| Sbjct 55274 TTCGA 55278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503992765760