Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq115 129 6e-28 seq22 96.9 4e-18 >seq115 Length=78495 Score = 129 bits (142), Expect = 6e-28 Identities = 100/123 (81%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | ||| ||||||||| | | | | ||||||| Sbjct 19000 AATCCGCATCTTCACGGATAATTCAAATTCACTGAGTTTATGTTGGAGACAGCGGGGATG 19059 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19060 TCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 19119 Query 169 CGT 171 ||| Sbjct 19120 CGT 19122 >seq22 Length=1013315 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 577637 TACACCATTCATGCAGGTCGGAACTTCCACGACAAGGAATTTCGCTACCTTAGGACCGTT 577578 Query 173 A 173 | Sbjct 577577 A 577577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547197450219