Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq23 138 2e-30 seq8 89.7 1e-15 >seq23 Length=920215 Score = 138 bits (152), Expect = 2e-30 Identities = 168/220 (76%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCC 59 |||||||| || | | ||||||| ||| ||| || |||| |||||||| |||||||| Sbjct 237379 CTTTACAA-CCTATTAGCCTTCTT-CACTCACTTGGTATTG-CTGGATCAAGCTTTCGCT 237435 Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||||||||||||| ||||||||||| | ||| ||| |||||||||||| ||| Sbjct 237436 CATTGTCCAATATTCCTCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCA 237494 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACC 177 |||| |||||||| || ||| | ||| || |||||| | |||||| || | || | | Sbjct 237495 ATGTGGCTGATCATTCTTTCAAATCAGCTAAAGATCGTAGGCTTGGTAAGTCTTTTAAAC 237554 Query 178 TCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG 217 | |||||||| |||||| | | |||||| |||||| Sbjct 237555 T-ACCAACTACCTAATCTTCCGCAAACTCATCCAATAGCG 237593 >seq8 Length=1936381 Score = 89.7 bits (98), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 6/169 (4%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || | | | || ||||| ||| | |||| |||||||| ||||| || | Sbjct 1116696 CTTTACAA-CCTATTAGCCTCCTTCACTCACTTGATATTG-CTGGATCAAGCTTTTGCTC 1116753 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||| |||||||||| ||||||||||| | ||| ||||||| ||| || ||| Sbjct 1116754 ATT--CCAATATTCCTCACTGCTGCCT--TTAAAAAGTTCGGACCGTATCTTAGGCCCAA 1116809 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 |||| ||||||| || ||| | ||| || |||||| | |||||| || Sbjct 1116810 TGTGGTTGATCATTCTTTCAAATCAGCTAAAGATCGTAGGCTTGGTAAG 1116858 Score = 84.2 bits (92), Expect = 5e-14 Identities = 87/113 (77%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 57 GCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 116 ||| ||||||||||||||| ||||||||||| | ||| ||||||||||||||| Sbjct 1127720 GCCTATTGTCCAATATTCCTCACTGCTGCCTTTAAAAA-AGTTTGGACCGTGTCTCAGGC 1127778 Query 117 CCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAG 169 ||| |||| ||| |||| || | | | ||| || |||||| | |||||| || Sbjct 1127779 CCAATGTGGCTGGTCATTCTATTAAATCAGCTAAAGATCGTAGGCTTGGTAAG 1127831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071994843680