Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq14 116 1e-23 seq18 82.4 3e-13 >seq14 Length=1185136 Score = 116 bits (128), Expect = 1e-23 Identities = 296/441 (67%), Gaps = 22/441 (5%) Strand=Plus/Minus Query 152 ATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTC 211 |||||| ||| ||||||||||| | |||||||||||||||||||||||| |||| || Sbjct 1150202 ATTTCGCGGAAAACCAGCTATCTCTGAGTTTGATTGGCCTTTCACCCCTAATCACAAATC 1150143 Query 212 ATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCA 271 |||||| | || | || || ||| ||||| ||||||| || ||||| ||||| Sbjct 1150142 ATCCCCGTATATTGCCACATACGTGAGTTCGATCCTCCAAATAGTTTTACCTATTCTTCA 1150083 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCAC---TCATACGCCC 328 | ||| ||| ||||||||| | |||||||||| | | || | ||| | | Sbjct 1150082 ATCTGTTCATAATTAGATCACTCAGTTTCGGGTCTTATTTTTATAACTTTTTATAAG-CT 1150024 Query 329 TATTCGGACTCGCTTTCGCTACGGCTA--CCCCACACGGGTTAACCTCGCGACACAACGC 386 | || ||| | |||| ||||| ||| | |||| || || | | || Sbjct 1150023 TTTTAAAACTTGATTTCTCTACGCCTATTTTTTTTATAAATTAAGCTTGCTA-AAAAAAT 1149965 Query 387 AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCA 446 ||||| || ||| |||| | ||||||| || | || || | || ||||| | Sbjct 1149964 AAACTTGCTGGCCCATTATGCAAAAGGTACACTGTTACTT--TA-TTAAAA--------A 1149916 Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT 506 ||| | | |||| | ||| | |||||| | | ||||||| | || || || Sbjct 1149915 GCTTCAATTGATTATTAGCATAGAGTTTCA-GAATTATTTCA-AACTCGAAAGCTTTA-- 1149860 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||||||||||| | || |||||||| | |||||||||| || | | | ||| || Sbjct 1149859 TTTCACCTTTCCTTTACAGTACTTGTTCACTATCGGTCATTAATTATTTTATAGATTTTG 1149800 Query 567 CGGGTGGTCCCGCCAGATTCA 587 |||||||||| | | ||||| Sbjct 1149799 AGGGTGGTCCCCCAATATTCA 1149779 >seq18 Length=1130244 Score = 82.4 bits (90), Expect = 3e-13 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| || | ||| |||||| ||| ||||||||||| | ||||||||||||||||| Sbjct 983676 ACGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTCTGAGTTTGATTGGCCTTTC 983617 Query 195 ACCCCTATCCACAGGTCATCCCC 217 ||||||| |||| |||||||| Sbjct 983616 ACCCCTAATCACAAATCATCCCC 983594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817591257344