Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq139 132 8e-29 seq13 91.5 2e-16 seq229 89.7 8e-16 seq80 84.2 3e-14 seq365 75.2 2e-11 >seq139 Length=7612 Score = 132 bits (146), Expect = 8e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| || ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 4863 GATAGGATCCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGC 4922 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||||| |||| ||||||| |||||||| || ||| |||||||| Sbjct 4923 GAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAGGATGTGATGAGTCGACATCG 4978 >seq13 Length=1515874 Score = 91.5 bits (100), Expect = 2e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| || ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 1062187 GATAGGATCCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGC 1062128 Query 220 GAACAGCCCAACCCTTGG 237 |||||||| ||||||||| Sbjct 1062127 GAACAGCCGAACCCTTGG 1062110 >seq229 Length=28830 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 174 TGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCC 233 |||||| ||||||||| ||||| ||| ||| || ||||||| ||||||||||| ||||| Sbjct 9578 TGTCTCACGACGTTCTATACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCC 9519 Query 234 TTGGGACCTACTTCAGC 250 |||| |||| ||||||| Sbjct 9518 TTGGAACCTTCTTCAGC 9502 >seq80 Length=117428 Score = 84.2 bits (92), Expect = 3e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| || ||||||||| ||||||| | |||||| ||| ||| || ||||||| ||| Sbjct 112776 GATAGGATCCAAACTGTCTCACGACGTTTTAAACCCAACTCACGTACCACTTTAATCGGC 112717 Query 220 GAACAGCCCAACCCTT 235 |||||||| ||||||| Sbjct 112716 GAACAGCCGAACCCTT 112701 Score = 84.2 bits (92), Expect = 3e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| || ||||||||| ||||||| | |||||| ||| ||| || ||||||| ||| Sbjct 113959 GATAGGATCCAAACTGTCTCACGACGTTTTAAACCCAACTCACGTACCACTTTAATCGGC 113900 Query 220 GAACAGCCCAACCCTT 235 |||||||| ||||||| Sbjct 113899 GAACAGCCGAACCCTT 113884 >seq365 Length=11504 Score = 75.2 bits (82), Expect = 2e-11 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 217 GGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||| ||||||||| |||| ||||||| |||||||| || ||| |||||||| Sbjct 137 GGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAGGATGTGATGAGTCGACATCG 79 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780796361716