Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq23 116 8e-24 >seq23 Length=920215 Score = 116 bits (128), Expect = 8e-24 Identities = 229/328 (70%), Gaps = 12/328 (4%) Strand=Plus/Plus Query 2 GACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCATC 61 ||| | ||||| || ||| |||| || ||||| || || |||| |||||| |||||| | Sbjct 420573 GACAGACTGCGGCACGTGTCGGAACGTGCCGAACTTGGGGAAGCCCGCGAGGCGATCTTG 420632 Query 62 GCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAAG 121 |||||||||||||| || |||||| ||| ||||| ||| ||| | | | | | || Sbjct 420633 GCCGTGACCATTCCAGAAGTGCCCGGGAGCCTCAAGCGGTTTTGCCACGACTTTCTCGAG 420692 Query 122 ---CGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAG-GCGCACATCTT 177 ||| ||| ||||| ||||||||| | | | | | || |||| |||||||| || Sbjct 420693 CACCGCGCGATTACCGAGTTCAACTACAGGTACAGCGAC-GCGACGAGAGCGCACATTTT 420751 Query 178 TGTCGGCGTGCAGACC-CACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGA 236 || || |||| ||| || ||| || ||| | ||| || || | | || || | Sbjct 420752 CGTGGGGTTGCAAACCACAAGCCG-CAGCGA--CGTGCATGGC-CTTGTGGACACACTCA 420807 Query 237 CCG-AGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATC 295 || ||| |||| || | ||| ||||||| |||||||| |||||| |||| | Sbjct 420808 ACGCCGCATCGTTTGCC-ACCATCGACTTGACCGACAATGAGCTCGCCAAGGAGCACGTG 420866 Query 296 CGCCATATGGTCGGCGGCCATGCGGCGC 323 || || ||||| ||||||| ||| ||| Sbjct 420867 CGACACATGGTTGGCGGCCCCGCGCCGC 420894 Score = 107 bits (118), Expect = 4e-21 Identities = 227/328 (69%), Gaps = 12/328 (4%) Strand=Plus/Minus Query 2 GACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCATC 61 ||| | ||||| || ||| |||| || ||||| || || |||| |||||| |||||| | Sbjct 416921 GACAGACTGCGGCACGTGTCGGAACGTGCCGAACTCGGGGAAGCCCGCGAGGCGATCTTG 416862 Query 62 GCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAAG 121 |||||||||||||| || |||||| ||| ||||| ||| ||| | | | | | || Sbjct 416861 GCCGTGACCATTCCAGAAGTGCCCGGGAGCCTCAAGCGGTTTTGCCACGACTTTCTCGAG 416802 Query 122 ---CGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAG-GCGCACATCTT 177 ||| ||| ||||| ||||||||| | | | | | || |||| |||||||| || Sbjct 416801 CACCGCGCGATTACCGAGTTCAACTACAGGTACAGCGAC-GCGACGAGAGCGCACATTTT 416743 Query 178 TGTCGGCGTGCAGACC-CACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGA 236 || || |||| ||| || ||| || ||| ||| || || | | || || | Sbjct 416742 CGTGGGGTTGCAAACCACAAGCCG-CAGCGA--AGTGCATGGC-CTTGTGGACACACTCA 416687 Query 237 CCG-AGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATC 295 || || |||| || | ||| ||||||| |||||||| |||||| |||| | Sbjct 416686 ACGCCGCCTCGTTTGCC-ACCATCGACTTGACCGACAATGAGCTCGCCAAGGAGCACGTG 416628 Query 296 CGCCATATGGTCGGCGGCCATGCGGCGC 323 || || ||||| ||||||| ||| ||| Sbjct 416627 CGACACATGGTTGGCGGCCCCGCGCCGC 416600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027195059168