Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq23 125 2e-26 seq8 87.8 4e-15 >seq23 Length=920215 Score = 125 bits (138), Expect = 2e-26 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| |||||||||| ||| || || |||| |||| |||| ||| ||| Sbjct 237379 CTTTACAACCTATTAGCCTTCTTCACTCACTTGGTATTGCTGGATCAAGCTTTCGCTCAT 237438 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||||||||| ||||||||||| | ||| ||| |||||||||||| ||| || Sbjct 237439 TGTCCAATATTCCTCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATG 237497 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT-GGGCCATTACCCCGC 182 |||||| |||| || ||| | |||||| |||||| | || ||| | | ||| | | Sbjct 237498 TGGCTGATCATTCTTTCAAATCAGCTAAAGATCGTAGGCTTGGTAAGTCTTTTAAACTAC 237557 Query 183 CAACTAGCTAATC 195 |||||| |||||| Sbjct 237558 CAACTACCTAATC 237570 >seq8 Length=1936381 Score = 87.8 bits (96), Expect = 4e-15 Identities = 86/110 (78%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTT 117 ||| ||||| ||||||||| ||||||||||| | ||| ||||||||||||||| Sbjct 1127720 GCCTATTGTCCAATATTCCTCACTGCTGCCTTTAAAAA-AGTTTGGACCGTGTCTCAGGC 1127778 Query 118 CCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||| ||||||||||||| || | | | |||||| |||||| | || ||| Sbjct 1127779 CCAATGTGGCTGGTCATTCTATTAAATCAGCTAAAGATCGTAGGCTTGGT 1127828 Score = 78.8 bits (86), Expect = 2e-12 Identities = 117/164 (71%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| |||| ||||| ||| | || |||| |||| |||| || ||| Sbjct 1116696 CTTTACAACCTATTAGCCTCCTTCACTCACTTGATATTGCTGGATCAAGCTTTTGCTCAT 1116755 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 | ||||||||| ||||||||||| | ||| ||||||| ||| || ||| || Sbjct 1116756 TC--CAATATTCCTCACTGCTGCCT--TTAAAAAGTTCGGACCGTATCTTAGGCCCAATG 1116811 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGT 167 ||| || |||| || ||| | |||||| |||||| | || ||| Sbjct 1116812 TGGTTGATCATTCTTTCAAATCAGCTAAAGATCGTAGGCTTGGT 1116855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222394120256