Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq23 248 3e-63 seq8 140 1e-30 seq3 100 9e-19 seq25 98.7 3e-18 seq36 95.1 4e-17 >seq23 Length=920215 Score = 248 bits (274), Expect = 3e-63 Identities = 259/335 (77%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGG-CTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| ||||||||| ||| | ||||||||| | |||||| |||| || ||| | Sbjct 237570 GATTAGGTAGTTGGTAGTTTAAAAGACTTACCAAGCCTACGATCTTTAGCTGATTTGAAA 237511 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 | ||||| |||||||||| |||||||||||| ||||||| | ||||||||||| Sbjct 237510 GAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAA-AGGCAGCAGTGA 237452 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCT 345 ||||||||| |||||| || ||||| |||| |||||| || ||||| || |||||| Sbjct 237451 GGAATATTGGACAATGAGCGAAAGCTTGATCCAGCAATACCAAGTGAGTGAAGAAGGCTA 237392 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAATGACGGTACTTGAGGAGGAAGCCCC 404 ||| |||||||||| || | ||||||| | || ||| |||||| | | |||| || Sbjct 237391 ATAGGTTGTAAAGCTCTTTCATTAAGGAAGAAAAAAGACAGTACTTAAAAAAGAAGTTCC 237332 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 |||||| | |||||||||||||||||||||||| || || ||| |||| || ||| | Sbjct 237331 GGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGAGCGAGCATTATTCGAAATGA- 237273 Query 465 TGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | |||||||||||| |||||| |||| |||||| Sbjct 237272 TTAGGCGTAAAGGGTTTGTAGGTTGTTTTTTAAGT 237238 >seq8 Length=1936381 Score = 140 bits (154), Expect = 1e-30 Identities = 181/247 (73%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 ||||||||| | |||||| |||| || ||| || ||||| ||||||||| || || Sbjct 1116858 CTTACCAAGCCTACGATCTTTAGCTGATTTGAAAGAATGATCAACCACATTGGGCCTAAG 1116799 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCC 311 | ||||||| |||| | ||||||||||| ||||||||| | ||| |||||||| Sbjct 1116798 ATACGGTCCGAACTTTTTAA--AGGCAGCAGTGAGGAATATTGGA--ATGAGCAAAAGCT 1116743 Query 312 TGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG 371 |||| |||||| | ||||| || | |||| ||| |||||||||| || | ||| Sbjct 1116742 TGATCCAGCAATATCAAGTGAGTGAAGGAGGCTAATAGGTTGTAAAGCTCTTTCATTAAG 1116683 Query 372 GAAGATAATGACGGTA-----CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCC 426 ||| | || ||| ||| ||| | | |||| |||||||| | ||||||||||||| Sbjct 1116682 GAAAA-AAGGACAGTAGCTTACTTAAAAACGAAGTTCCGGCTAATTTCGTGCCAGCAGCC 1116624 Query 427 GCGGTAA 433 |||||| Sbjct 1116623 TCGGTAA 1116617 Score = 87.8 bits (96), Expect = 5e-15 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 192 CTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAG 251 ||||||||| | |||||| |||| || | | || ||| | |||||||||| ||||| Sbjct 1127831 CTTACCAAGCCTACGATCTTTAGCTGATTTAATAGAATGACCAGCCACATTGGGCCTGAG 1127772 Query 252 ACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGC 304 |||||||||||||| | ||||||||||| ||||||||| ||||| ||| Sbjct 1127771 ACACGGTCCAAACT-TTTTTAAAGGCAGCAGTGAGGAATATTGGACAATAGGC 1127720 >seq3 Length=3119476 Score = 100 bits (110), Expect = 9e-19 Identities = 184/263 (70%), Gaps = 20/263 (8%) Strand=Plus/Plus Query 237 CACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCA 296 |||||||| |||||||||||| ||||| || | |||||| |||| |||||||| | Sbjct 2937365 CACATTGGGACTGAGACACGG-CCAAATTCTTTTAA-AGGCAG-AGTGACGAATATTGGA 2937421 Query 297 CAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAA 356 ||||| || |||| | || ||||| || ||||| | ||| ||| Sbjct 2937422 CAATGAGCGAAAG--TTATCCAGCAT------------GAAGAAGGATTATAGGTTGTAC 2937467 Query 357 AGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGT 416 |||||| | | || ||||| || ||| |||||| | | || ||||||| | ||| Sbjct 2937468 AGCTCTTGCATTAAAGAAGAAAAAGACAGTACTTAAAATGAAAATTCCGGCTATTT-CGT 2937526 Query 417 GCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAG 476 |||||||| ||||||||||| || || ||| ||| || ||| | | || ||||||| Sbjct 2937527 GCCAGCAGG-GCGGTAATACGAGTGGAGCGAGCATTACTCGAAATGATTCGG-CGTAAAG 2937584 Query 477 GGTGCGTAGGTGGTTTCTTAAGT 499 ||| ||||| |||| |||||| Sbjct 2937585 GGTTTGTAGGACGTTTATTAAGT 2937607 >seq25 Length=1058404 Score = 98.7 bits (108), Expect = 3e-18 Identities = 158/225 (70%), Gaps = 18/225 (8%) Strand=Plus/Minus Query 274 AGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAG 333 ||||||||||| ||||||||| |||||| || ||||| |||| |||||| || Sbjct 595004 AGGCAGCAGTGAGGAATATTGGACAATGAGCGAAAGCTTGATCCAGCAATACCA------ 594951 Query 334 CGAT-GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGA 392 || |||||| ||| | |||| | || | ||||| ||| ||| |||| Sbjct 594950 --ATAGAAGGCTAATAGGTTCTGAAGCGGTTTCATTAAGGA---TAAAGACAGTAC---- 594900 Query 393 GGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTT 452 || || ||||||| | ||||||||||||||| | |||||| ||||| ||| || Sbjct 594899 -GAAAAAAGTTCGGCTAATTTCGTGCCAGCAGCCGCAGCAATACGAGAGGGGCGAGCATT 594841 Query 453 ATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 || || ||| | | |||||||||||| |||||| | || |||| Sbjct 594840 ATTCGAAATGA-TTCGGCGTAAAGGGTTTGTAGGTTGCTTTTTAA 594797 >seq36 Length=501460 Score = 95.1 bits (104), Expect = 4e-17 Identities = 90/114 (79%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 349 GGTCGTAAAGCTCTGTCCTCAAGGAAGATAAT-GACGGTACTTGAGGAGGAAGCCCCGGC 407 ||| |||||||||| || | |||||||| || ||| |||||| | | |||| ||||| Sbjct 420187 GGTTGTAAAGCTCTTTCATTAAGGAAGAAAAAAGACAGTACTTAAAAAAGAAGTTCCGGC 420128 Query 408 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAAT 461 ||| | |||||||||||||||||||||||| || || ||| |||| || ||| Sbjct 420127 TAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGAGCGAGCATTATTCGAAAT 420074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497592796544