Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq23 100 7e-19 seq25 82.4 2e-13 >seq23 Length=920215 Score = 100 bits (110), Expect = 7e-19 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||| | | |||| |||||||| | |||||||||||||||||||||||| || || Sbjct 237350 TACTTAAAAAAGAAGTTCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGAGC 237291 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 113 ||| |||| || ||| | | |||||||||||| |||||| |||| |||||| Sbjct 237290 GAGCATTATTCGAAATGATTAGGCGTAAAGGGTTTGTAGGTTGTTTTTTAAGT 237238 >seq25 Length=1058404 Score = 82.4 bits (90), Expect = 2e-13 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||| | ||||||||||||||| | |||||| ||||| ||| |||| || ||| | Sbjct 594889 CGGCTAATTTCGTGCCAGCAGCCGCAGCAATACGAGAGGGGCGAGCATTATTCGAAATGA 594830 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 111 | |||||||||||| |||||| | || |||| Sbjct 594829 TTCGGCGTAAAGGGTTTGTAGGTTGCTTTTTAA 594797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203194212608