Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq277 271 1e-70 seq4 89.7 1e-15 >seq277 Length=2894 Score = 271 bits (300), Expect = 1e-70 Identities = 250/313 (80%), Gaps = 5/313 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGC---CCGCTTTGGCGGGTCGCCGGCTTCT 76 || |||||||| | |||||||||| | || || ||||| ||| | ||||| Sbjct 2227 GAACGAGACCTCCGCGTGCTAAATAGTCCTGCTTACCAATTTGGTAGGTAAG-GACTTCT 2285 Query 77 TAGAGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCC 135 |||||||||| || | | | | || ||||||| ||||||||||||||||||||||||| Sbjct 2286 TAGAGGGACTTTCAGTGACTAACTGAAGGAAGTTGGAGGCAATAACAGGTCTGTGATGCC 2345 Query 136 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTG 195 |||||||||||||||||||||||||||||||||| | |||||||| || |||||| Sbjct 2346 CTTAGATGTTCTGGGCCGCACGCGCGCTACACTGGTACGCTCAACGAGTATATAACCTTG 2405 Query 196 GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATT 255 || |||||||||||||||| | || | ||||||| |||||||| ||||||||| Sbjct 2406 ATCGATAGGTCTGGGTAATCTTTTGAATACGTATCGTGCTAGGGATAGATTATTGCAATT 2465 Query 256 ATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTC 315 ||| |||| |||||||||| |||||||| ||| ||||||||| || ||||||||||| Sbjct 2466 ATTAATCTTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGCTTGCATTGATTACGTC 2525 Query 316 CCTGCCCTTTGTA 328 ||||||||||||| Sbjct 2526 CCTGCCCTTTGTA 2538 >seq4 Length=2763071 Score = 89.7 bits (98), Expect = 1e-15 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 203 GGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTC 262 ||||||||||||||| | || | |||||| |||||||| |||||||||||| | Sbjct 957345 GGTCTGGGTAATCTTTTGAATACGTATCGTGCAAGGGATAGATTATTGCAATTATTAAAC 957404 Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGC 299 || |||||||||| |||||||| ||| ||||||||| Sbjct 957405 TTGAACGAGGAATTCCTAGTAAACGCAAGTCATCAGC 957441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947195443968