Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq14 109 2e-21 seq18 77.0 1e-11 >seq14 Length=1185136 Score = 109 bits (120), Expect = 2e-21 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||| ||| ||||| ||||| || |||| Sbjct 1150048 AGACCCGAAACTGAGTGATCTAATTATGAACAGATTGAAGAATAGGTAAAACTATTTGGA 1150107 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | || || |||||||| |||| |||||||||||||| Sbjct 1150108 GGATCGAACTCACGTATGTGGCAATATACGGGGATGATTTGTGATTAGGGGTGAAAGGCC 1150167 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || |||||| || |||||||||| || ||||| ||||| | |||| || Sbjct 1150168 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGC 1150217 >seq18 Length=1130244 Score = 77.0 bits (84), Expect = 1e-11 Identities = 94/127 (74%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 123 GGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182 |||||||| |||| |||||||||||||| || |||||| || |||||||||| || Sbjct 983594 GGGGATGATTTGTGATTAGGGGTGAAAGGCCAATCAAACTCAGAGATAGCTGGTTTTCCG 983653 Query 183 CGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGGCT 242 ||||| ||||| | |||| || | | ||| | ||||||||| |||| | ||| Sbjct 983654 CGAAATCTATTGAAGTAGAGCGTTTAAAATC-TTTTTGGGGGTAGATCACTCATTAAGCT 983712 Query 243 AGGGGGT 249 |||| || Sbjct 983713 AGGGAGT 983719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689591873024