Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq115 156 1e-35 seq22 91.5 5e-16 >seq115 Length=78495 Score = 156 bits (172), Expect = 1e-35 Identities = 170/229 (74%), Gaps = 19/229 (8%) Strand=Plus/Plus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || || | ||| ||||| | | | || | |||||||| ||| |||||| Sbjct 19005 GCATCTTCACGGATAATTCAAATTCACTGAGTTTATGTTGGAGACAGCGGGGATGTCGTT 19064 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 || |||||| |||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 19065 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 19124 Query 451 TAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGC 510 |||||| ||||||||||||||| ||| || ||| | | || Sbjct 19125 GAGTTACGGCCGCCGTTTACTGGGACTTTCAT--------TCAAA-----------GCGC 19165 Query 511 TCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATA 559 || |||| |||| |||||||||||||||||| ||||| || |||| Sbjct 19166 AAACTTTTCCTATTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATA 19214 >seq22 Length=1013315 Score = 91.5 bits (100), Expect = 5e-16 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| |||||| ||||||||||||||| | |||||||||||||||||||||||||| Sbjct 577641 TCGTTACACCATTCATGCAGGTCGGAACTTCCACGACAAGGAATTTCGCTACCTTAGGAC 577582 Query 446 GGTTA 450 |||| Sbjct 577581 CGTTA 577577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702391811456