Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq277 500 3e-139 seq65 273 7e-71 seq55 172 2e-40 >seq277 Length=2894 Score = 500 bits (554), Expect = 3e-139 Identities = 421/511 (82%), Gaps = 18/511 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 || |||||||||||| | |||| ||| ||||| | || |||||||||||||||||| Sbjct 1412 GTTCTCATTCCAATTGCCAGACT-AAATTAGCCCGGCATTGTTATTTATTGTCACTACCT 1354 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1353 CCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1294 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||| Sbjct 1293 TCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAACGCCATGGTA 1234 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||||| |||| |||||||||||||| | | || ||| ||| Sbjct 1233 GGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGACTTATC----GCT 1178 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGCCCCGAAGGGCGTTGG 299 | ||||| | ||||||||||| ||| || | | | |||||| | |||| Sbjct 1177 TA-----GAGCGATCAGCACAGTTATTATGATTCAACACAAAATCACCGAAGTGAATTGG 1123 Query 300 TTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAG 354 ||| ||||||||||| | ||| ||||| ||| ||| ||| ||||||||||| Sbjct 1122 -TTTCAATCTAATAAATGCTACCCGTCCGACAAGCAGTTGGGTATTTATGCATGTATTAG 1064 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| ||||||||||| ||||||||||||| || | || || ||||||||| Sbjct 1063 CTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTGTCGAGTAGACTATAACTGATA 1004 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| ||| | | ||| |||||||||||||||||||||||| Sbjct 1003 TAATGAGCCATTCGCAGTTTCACAGTACAAAGTTGTTTATACTTAGACATGCATGGCTTA 944 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||| ||||||||||||||| Sbjct 943 ATCTTTGAGACAAGCGTATGACTACTGGCAG 913 >seq65 Length=287223 Score = 273 bits (302), Expect = 7e-71 Identities = 290/376 (77%), Gaps = 21/376 (6%) Strand=Plus/Plus Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 ||||||||| |||||||||||||||||||||||| | |||||||||||| | || Sbjct 67763 TCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAACTCCATGGTAGGCCCATG----AC 67818 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 |||| |||| |||||||||||||| | || || | | ||| | || || || Sbjct 67819 CATCCAAAGCTGATAGGGCAGAAAATCAAACGACTTA----CAGCTTAGAGCGAT-CGGC 67873 Query 255 TCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGTTTTTTATCTAATAA 314 | ||| ||||||| ||| ||| | | |||||| | ||||||| ||||||||| Sbjct 67874 AC----AGTCATTATGATTCAACAAA-ATCACCGAAGTGAATTGGTTTCA-ATCTAATAA 67927 Query 315 ATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCAC 369 || | ||| ||||| ||| ||| | | ||||||||||||||||||||||| || Sbjct 67928 ATGCTACCCGTCCGACAAGCAGTTGGGTATATATGCATGTATTAGCTCTAGAATTACTAC 67987 Query 370 GGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGC 429 ||||||||| ||| | |||||||||| | || || | ||||||| || |||||||||||| Sbjct 67988 GGTTATCCAAGTAATTAGGTACTATCGAGTAGACTAAAACTGATATATTGAGCCATTCGC 68047 Query 430 AGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGC 488 |||||||| || || ||| ||| ||||||||||||||||||||||||||||||||| | Sbjct 68048 AGTTTCACAATACGAGGTTGTTTAAACTTAGACATGCATGGCTTAATCTTTGAGACAAAC 68107 Query 489 ATATGACTACTGGCAG 504 |||||||||| |||| Sbjct 68108 GTATGACTACTAGCAG 68123 >seq55 Length=411690 Score = 172 bits (190), Expect = 2e-40 Identities = 113/125 (90%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 30 AGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCG 89 ||||| | || ||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 384998 AGCCCGGCATTGTTATTTATTGTCACTACCTCCCTGTGTCAGGATTGGGTAATTTACGCG 384939 Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| Sbjct 384938 CCTGCTGCCTTCCTTGGATGTGATAGCCGTTTCTAAGGCTCCCTCTCCGGAATCAAACCC 384879 Query 150 TAATT 154 || || Sbjct 384878 TACTT 384874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510392734976