Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aphanomyces_20invadans_20[genbank_20GCA_5F000520115.1_202014-01-15] 481 sequences; 71,402,472 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq18 159 3e-34 seq1 123 2e-23 >seq18 Length=1130244 Score = 159 bits (176), Expect = 3e-34 Identities = 372/550 (68%), Gaps = 16/550 (3%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||||||||||||||| ||||||||| | ||| ||| | || ||| | || Sbjct 427615 ATGTACAAAAAGGCGGAAGCGAGCTTCTGGACAGCGGAAGAGCTAGACTTGGTGCACGA- 427557 Query 61156 ATGAATG--ACTGGG---AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGT 61210 | || | |||||| ||| ||| ||| | |||| ||||| | |||||| Sbjct 427556 -TCAACGCGACTGGGTCAAGC--TTACCGA-CAACGAACGTTTCTTCATCACGCATGTGC 427501 Query 61211 TGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGC 61268 |||||||||||||||| ||||| ||||| || || || | | |||| ||| || Sbjct 427500 TGGCGTTCTTTGCCGCGAGTGACGGGATCGTGAACGAAAACCTCGCGATGAAC-TTTAGC 427442 Query 61269 GCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAA 61328 | || || |||||| | || || || || |||||||| |||||||||||||| ||||| Sbjct 427441 A-ATGAAGTACAAGTGCCTGAAGCCCGGTGCTTCTACGGGTTCCAGATTGCCATTGAGAA 427383 Query 61329 TGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACG 61388 | ||||| || ||||| | |||||||| |||||||||| ||| ||||| Sbjct 427382 CATTCACTCTGAAGTGTACTCGCTCCTCATCGACACGTACATCAAGGATGCCACGGAAAA 427323 Query 61389 TGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC 61448 || || | | |||||| || ||||| || || || ||||| ||||| Sbjct 427322 GGACCGGGTCCTGCGTGCCATTGACACGATCCCCTGTGTCCGACGCAAAGCCACCTGGGC 427263 Query 61449 CTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 || || ||| | || || | || ||| | | | |||||| | | || ||||| | Sbjct 427262 TTTGAAGTGGTGCGACAATA-AGCGTGCTGCCTACGCTGAACGTATCGTTGCCTTTGCCG 427204 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 ||||| || | || ||| || ||||| | | ||||| ||| | ||||| || | Sbjct 427203 CTGTCGAAGGCATCTTCTTCTCGGGGTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGAG 427144 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 | || ||||| ||| || ||||| || || | || || |||||||| || |||| | Sbjct 427143 GTCTAATGCCGGGTTTGTCCTTCTCGAACGAACTCATTTCTCGCGACGAAGGTCTGCACT 427084 Query 61628 GTGATTTTGC 61637 | || ||||| Sbjct 427083 GCGACTTTGC 427074 >seq1 Length=2817317 Score = 123 bits (136), Expect = 2e-23 Identities = 248/365 (68%), Gaps = 2/365 (1%) Strand=Plus/Plus Query 66429 CAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGC 66488 |||| ||||| || ||||| ||||||| ||| ||||| ||||| ||| | || || || | Sbjct 1825325 CAAAAATGTCAGCGTGCCAAGGTTCCAAGTACATGGCAAACGACCCCTTTCGCTTTCCAC 1825384 Query 66489 CACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGT 66548 | ||||||||||| || || || | |||||| || || | ||| || | || ||||| Sbjct 1825385 CGCCTTGGTCGACATAACGGGCCGTGTCGTTGAACACGCGAAGCATGGGAATGATCCCGT 1825444 Query 66549 TAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTC 66607 | || || || || || |||| | | | |||| || || || | ||| | ||| Sbjct 1825445 TCGAAGACCCGTTCGTTCC-TCGAATGTAGCTGTTCGTGGCGCGGATGTTGTGGATGTTC 1825503 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATG 66667 | ||| || ||||| ||| ||| || ||| || || | || ||| | | ||| Sbjct 1825504 ACACCGATTCCACCAGCCCACTTGGAAATGCACGCGCAGTTTTTCAATGTGTCGTAAATG 1825563 Query 66668 CCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGT 66727 || ||||| ||||| | || |||| ||| | |||| || ||||| || || Sbjct 1825564 CCTTCAATCGAGTCGTCTTTCATGGACAGCAAAAAGCACGACGAGAGTTGAGGGCGCGGC 1825623 Query 66728 GTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTG 66787 ||| |||| ||| | |||||||| ||||| |||||||| | |||||||| | | Sbjct 1825624 GTGCCGGCATTGAACAACGTGGGTGTTGCGTGGGTAAAGTACAATTGGGACATGTACTCG 1825683 Query 66788 TACGT 66792 || || Sbjct 1825684 TAGGT 1825688 Score = 105 bits (116), Expect = 5e-18 Identities = 263/402 (65%), Gaps = 18/402 (4%) Strand=Plus/Plus Query 65782 CTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGAT 65841 |||| ||| | ||||| |||| ||| | || ||||| ||||| || ||||| ||||| Sbjct 1824654 CTCGAACGCGAATCCCATGAGGATAAACGCATCCGCCAGCCCTTGGACACCAATGCCGAT 1824713 Query 65842 GGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGAT 65901 || || || |||| ||| | ||| || | |||||||| |||| ||||| Sbjct 1824714 CGGGCGGTGCCGCATGTTGCTGTTGCGCGCTTCTTCGATGGGGTAGTAGTTGACGTCGAT 1824773 Query 65902 AATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAA 65961 | ||||| ||| || ||||| | |||| |||| |||| ||| || || Sbjct 1824774 GACCTTGTTCAAGTTGGTCGTGACCACCTTGGCGATCTTGTGCAAGTGTTGGAAGTCGAA 1824833 Query 65962 ATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAG 66021 ||| ||| | | |||||||||| || || | ||||| | Sbjct 1824834 C--------ACG----------CCGTTCTCAACAAACTTGGAGAGCGCGATGGATGCCAA 1824875 Query 66022 GTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACT 66081 |||||| || || | ||||| || ||||||| |||||| ||||| || || Sbjct 1824876 GTTGCACACGGCGACTTCGTCTTTGCTCGTGTACTCGATGATTTCGCAGCACAAGTTGCT 1824935 Query 66082 GCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACAT 66141 | || ||||| | |||||||| || ||||| ||||| ||||||||||||| Sbjct 1824936 CGATTTGATCGTGCCGAGGTTCTGTTGGTTGGACTTGCCGTTGCACGCATCCTTGTACAA 1824995 Query 66142 CATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGC 66183 ||||||||| ||||| || || ||||| || || | |||||| Sbjct 1824996 CATGTACGGGGTGCCTGTTTCTACTTGCGATTCCAAGATGGC 1825037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565669381840