Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq61 210 4e-52 >seq61 Length=466 Score = 210 bits (232), Expect = 4e-52 Identities = 215/278 (77%), Gaps = 22/278 (8%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTA--TCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 ||||||||||||||| |||| | | | | ||||||| |||||||||||||||||| Sbjct 16 GCTTCTTAGAGGGACATGTTCGGTTTACGAGCA-GGAAGTTCGAGGCAATAACAGGTCTG 74 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT---- 184 |||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 75 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGGGTTCAACGGGTCTTT 134 Query 185 ----TCATCAC---------CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTG-TC 230 | || | ||| ||||||||| ||| ||||| | || ||| || || Sbjct 135 TCGCTGCTCGCAGCGAGTTGCTTTGCCGGAAGGCATGGCTAATCCT-TTCAACGCTCATC 193 Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||||||||| |||| ||||||||||| ||| ||||||||||| |||||||| ||| Sbjct 194 GTGCTGGGGCTAGATTTTTGCAATTATTAATCTCCAACGAGGAATTCCTAGTAAACGCAA 253 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| || |||| ||||||||||||||||||| Sbjct 254 GTCATCAGCTTGCATTGAATACGTCCCTGCCCTTTGTA 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947182505216