Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq118 522 9e-146 seq8 77.0 1e-11 >seq118 Length=1300 Score = 522 bits (578), Expect = 9e-146 Identities = 447/543 (82%), Gaps = 18/543 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||| ||| ||||||||||||||| ||| | |||||||||||||| ||| | Sbjct 683 CTTTTGCGCTAAGTGAGATTTCTGTTCTCACGGAGCTCTCCTTAGGACACCTGTGTTCTC 742 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC-ATCAACCCGGAT 125 | ||||||||||||||||||||||||||||||||||||||||| || ||| | ||| Sbjct 743 TTCTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATTTCTATCG-CGTTGAT 801 Query 126 CGGCCCGCG---AAGGACCTTAACG-CCAGAAAATGGTCGGT-------GAAGACCAGTT 174 || | ||| ||| | |||||| ||| | | | || ||| | Sbjct 802 TGGTTCTAATGAAAGAACCGTGGGTACCAGAAT-TGGACAGCCTTATCGGCAGGCCAATC 860 Query 175 CCGCTTCATTGAT-TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC-GAA 232 | | ||| ||||||||| |||| | || | ||||||||| | ||| || Sbjct 861 ACAATGTGACGATATAAGTAAAACGTCGATGTGAGTGGCGGTATTTCAAGGGTGCCCGAG 920 Query 233 ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGC 292 | |||||| | ||||||||||||| || | |||||||||| ||| |||||||||||||| Sbjct 921 A--GCTCCCGCCTATTCTACACCTCACATGACATTTCACAATGTCAGACTAGAGTCAAGC 978 Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 979 TCAACAGGGTCTTCTTTCCCCGCTGATTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 1038 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1039 CTAGATAGTAAATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAGTTA 1098 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1099 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 1158 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || ||||||| |||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 1159 TTTTTTGAATTACTTCACGATGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAGC 1218 Query 533 ATC 535 ||| Sbjct 1219 ATC 1221 >seq8 Length=7525 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG-TCACTAATTAGATGACGAG-GC 423 || ||||||| | || ||| |||||||||||| | ||| ||||||| |||| | | Sbjct 3938 AGAGACAGTGAAACAGTCATTACTCCATTCATGCGGGATCA-TAATTAG-TGACCAATGA 3881 Query 424 ATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||| ||||||||| || ||||| ||||||| ||||||||||| Sbjct 3880 ATTTCGCTACCTTAGGACAGTCAGAGTTACTGCCGCCGTTTAC 3838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635169797856