Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq11 259 2e-66 seq2 123 1e-25 >seq11 Length=1405779 Score = 259 bits (286), Expect = 2e-66 Identities = 231/282 (82%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||||| || ||||||| |||| ||| || Sbjct 137993 CCCGTCTTGAAACACGGACCAAGGAGTCTAAAATACGAGCGAGTGCGCCGGTGGCAACCC 137934 Query 468 CGTGCGCGTAATGAAAGTGA-ACGGA-GGTGGGAACCCGTGAGGGT-GCACCATCGACCG 524 | ||||||||||||||||| || || ||||||| | | | | |||||||| |||| Sbjct 137933 GGGGCGCGTAATGAAAGTGAGACCGACGGTGGGAGGGCTTTACGTCCGCACCATCAACCG 137874 Query 525 ATCCTGATGTCTTCGGATGGA---TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | ||| || ||| || | ||||||| ||| | | |||||||||||||||| Sbjct 137873 ACCAGGATC-CTCCGGGTGAAAGGTTTGAGTGT-AGCTTGTATTTTGGGACCCGAAAGAT 137816 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| | Sbjct 137815 GGTGAACTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGAT 137756 Query 642 TCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| ||||||||||||||||||||||||||||||||||||| Sbjct 137755 TCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 137714 Score = 201 bits (222), Expect = 5e-49 Identities = 197/247 (80%), Gaps = 8/247 (3%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||||| || ||||||| |||| ||| || Sbjct 672768 CCCGTCTTGAAACACGGACCAAGGAGTCTAAAATACGAGCGAGTGCGCCGGTGGCAACCC 672709 Query 468 CGTGCGCGTAATGAAAGTGA-ACGGA-GGTGGGAACCCGTGAGGGT-GCACCATCGACCG 524 | ||||||||||||||||| || || ||||||| | | | | |||||||| |||| Sbjct 672708 GGGGCGCGTAATGAAAGTGAGACCGACGGTGGGAGGGCTTTACGTCCGCACCATCAACCG 672649 Query 525 ATCCTGATGTCTTCGGATGGA---TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | ||| |||||| || | ||||||| ||| | | |||||||||||||||| Sbjct 672648 ACCAGGATC-CTTCGGGTGAAAGGTTTGAGTGT-AGCTTGTATTTTGGGACCCGAAAGAT 672591 Query 582 GGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGT 641 |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| | Sbjct 672590 GGTGAACTATGCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGAT 672531 Query 642 TCTGGCG 648 |||| || Sbjct 672530 TCTGACG 672524 Score = 149 bits (164), Expect = 3e-33 Identities = 134/167 (80%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 95813 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 95755 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 95754 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 95695 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||||||||||||| | ||||| || | | |||||| || Sbjct 95694 TTTGAAAAGAGAGTTAAAAAGGGCCTGAAACTGGTAAGAGGGAACCG 95648 Score = 149 bits (164), Expect = 3e-33 Identities = 134/167 (80%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 138335 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 138277 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 138276 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 138217 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||||||||||||| | ||||| || | | |||||| || Sbjct 138216 TTTGAAAAGAGAGTTAAAAAGGGCCTGAAACTGGTAAGAGGGAACCG 138170 Score = 149 bits (164), Expect = 3e-33 Identities = 134/167 (80%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 363758 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 363816 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 363817 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 363876 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||||||||||||| | ||||| || | | |||||| || Sbjct 363877 TTTGAAAAGAGAGTTAAAAAGGGCCTGAAACTGGTAAGAGGGAACCG 363923 Score = 149 bits (164), Expect = 3e-33 Identities = 134/167 (80%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 598150 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 598092 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 598091 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 598032 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||||||||||||| | ||||| || | | |||||| || Sbjct 598031 TTTGAAAAGAGAGTTAAAAAGGGCCTGAAACTGGTAAGAGGGAACCG 597985 Score = 149 bits (164), Expect = 3e-33 Identities = 134/167 (80%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 673110 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 673052 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 673051 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 672992 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||||||||||||| | ||||| || | | |||||| || Sbjct 672991 TTTGAAAAGAGAGTTAAAAAGGGCCTGAAACTGGTAAGAGGGAACCG 672945 Score = 149 bits (164), Expect = 3e-33 Identities = 134/167 (80%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 744385 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 744327 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 744326 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 744267 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||||||||||||| | ||||| || | | |||||| || Sbjct 744266 TTTGAAAAGAGAGTTAAAAAGGGCCTGAAACTGGTAAGAGGGAACCG 744220 Score = 145 bits (160), Expect = 3e-32 Identities = 160/206 (78%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||||| || ||||||| |||| ||| || Sbjct 95471 CCCGTCTTGAAACACGGACCAAGGAGTCTAAAATACGAGCGAGTGCGCCGGTGGCAACCC 95412 Query 468 CGTGCGCGTAATGAAAGTGA-ACGGA-GGTGGGAACCCGTGA-GGGTGCACCATCGACCG 524 | ||||||||||||||||| || || ||||||| | | | | |||||||| |||| Sbjct 95411 GGGGCGCGTAATGAAAGTGAGACCGACGGTGGGAGGGCTTTACGTCCGCACCATCAACCG 95352 Query 525 ATCCTGATGTCTTCGGATG---GATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGAT 581 | | ||| |||||| || | ||||||| ||| | | |||||||||||||||| Sbjct 95351 ACCAGGAT-CCTTCGGGTGAAAGGTTTGAGT-GTAGCTTGTATTTTGGGACCCGAAAGAT 95294 Query 582 GGTGAACTATGCCTGAATAGGGTGAA 607 |||||||||||||||||||||| ||| Sbjct 95293 GGTGAACTATGCCTGAATAGGGCGAA 95268 Score = 86.0 bits (94), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| ||||||||||||||||||||| || ||||||| |||| ||| || Sbjct 597808 CCCGTCTTGAAACACGGACCAAGGAGTCTAAAATACGAGCGAGTGCGCCGGTGGCAACCC 597749 Query 468 CGTGCGCGTAATGAAAGTGA-ACGGA-GGTGGGA 499 | ||||||||||||||||| || || ||||||| Sbjct 597748 GGGGCGCGTAATGAAAGTGAGACCGACGGTGGGA 597715 >seq2 Length=3465789 Score = 123 bits (136), Expect = 1e-25 Identities = 108/133 (81%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAA 92 ||||||||||||| ||| |||||| ||||| | ||| ||| |||||||| | ||||| Sbjct 3165870 CTTCGACGAGTCGGTTTGCTTGGGATTGCAGACC-AAACGGGTGGTAAATTCCATCTAAG 3165928 Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| || ||||||||||||| ||||||| |||| |||||||| |||| || Sbjct 3165929 GCTAAATACGGGTGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGCAAAGAAC 3165988 Query 153 TTTGGAAAGAGAG 165 |||| |||||||| Sbjct 3165989 TTTGAAAAGAGAG 3166001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079974581750