Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11 269 4e-70 seq2 269 4e-70 >seq11 Length=1405779 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 97016 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 97075 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 97076 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 97135 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 97136 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 97194 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 97195 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 97254 Query 254 CTGTC 258 ||||| Sbjct 97255 CTGTC 97259 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 139526 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 139585 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 139586 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 139645 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 139646 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 139704 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 139705 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 139764 Query 254 CTGTC 258 ||||| Sbjct 139765 CTGTC 139769 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 322194 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 322253 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 322254 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 322313 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 322314 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 322372 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 322373 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 322432 Query 254 CTGTC 258 ||||| Sbjct 322433 CTGTC 322437 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 362566 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 362507 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 362506 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 362447 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 362446 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 362388 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 362387 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 362328 Query 254 CTGTC 258 ||||| Sbjct 362327 CTGTC 362323 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 544600 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 544541 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 544540 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 544481 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 544480 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 544422 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 544421 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 544362 Query 254 CTGTC 258 ||||| Sbjct 544361 CTGTC 544357 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 599350 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 599409 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 599410 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 599469 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 599470 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 599528 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 599529 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 599588 Query 254 CTGTC 258 ||||| Sbjct 599589 CTGTC 599593 >seq2 Length=3465789 Score = 269 bits (298), Expect = 4e-70 Identities = 209/245 (85%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 3326099 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 3326158 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 3326159 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 3326218 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 3326219 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 3326277 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3326278 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAAT 3326337 Query 254 CTGTC 258 ||||| Sbjct 3326338 CTGTC 3326342 Score = 208 bits (230), Expect = 1e-51 Identities = 173/208 (83%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 3164668 CAGTGTAGCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCC 3164609 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCAC--CAACCATAGT 133 | ||||| | || | | || | ||||||||||||||| || || ||| | | | Sbjct 3164608 AGCTTCCTTCGGTTAGTCACCGAAAGTCCCTCTAAGAAGTTGAGGCAATGCAAGCGCATT 3164549 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | |||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 3164548 CCCACAG-CTATTTAGCAGGCGGGGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCA 3164490 Query 194 CTCCACCAACTAAGAACGGCCATGCACC 221 |||||||||||||||||||||||||||| Sbjct 3164489 CTCCACCAACTAAGAACGGCCATGCACC 3164462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796790852985