Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq11 363 3e-98 seq2 363 3e-98 >seq11 Length=1405779 Score = 363 bits (402), Expect = 3e-98 Identities = 243/268 (91%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 93220 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 93279 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 93280 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 93339 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93340 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 93399 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGA 266 |||||||||||||||||||| |||||||||| ||||| ||||| || |||||||||||| Sbjct 93400 TCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA-TTCGAAAGATCTAAAGGATCGA 93458 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| |||||| ||||||||||| Sbjct 93459 TAGGCCATGCTTTCACAGTTTGTATTCA 93486 Score = 363 bits (402), Expect = 3e-98 Identities = 243/268 (91%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 366025 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 365966 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 365965 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 365906 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 365905 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 365846 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGA 266 |||||||||||||||||||| |||||||||| ||||||| ||| || |||||||||||| Sbjct 365845 TCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATT-CGAAAGATCTAAAGGATCGA 365787 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| |||||| ||||||||||| Sbjct 365786 TAGGCCATGCTTTCACAGTTTGTATTCA 365759 Score = 363 bits (402), Expect = 3e-98 Identities = 243/268 (91%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 595637 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 595696 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 595697 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 595756 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595757 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 595816 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGA 266 |||||||||||||||||||| |||||||||| ||||| ||||| || |||||||||||| Sbjct 595817 TCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA-TTCGAAAGATCTAAAGGATCGA 595875 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| |||||| ||||||||||| Sbjct 595876 TAGGCCATGCTTTCACAGTTTGTATTCA 595903 Score = 363 bits (402), Expect = 3e-98 Identities = 243/268 (91%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 670590 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 670649 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 670650 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 670709 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670710 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 670769 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGA 266 |||||||||||||||||||| |||||||||| ||||| ||||| || |||||||||||| Sbjct 670770 TCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAA-TTCGAAAGATCTAAAGGATCGA 670828 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| |||||| ||||||||||| Sbjct 670829 TAGGCCATGCTTTCACAGTTTGTATTCA 670856 Score = 291 bits (322), Expect = 1e-76 Identities = 184/199 (92%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 741732 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 741791 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 741792 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 741851 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741852 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 741911 Query 208 TCCCTGTGGTAACTTTTCT 226 ||||||||||||||||||| Sbjct 741912 TCCCTGTGGTAACTTTTCT 741930 Score = 255 bits (282), Expect = 1e-65 Identities = 167/183 (91%), Gaps = 1/183 (1%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 135865 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 135924 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 135925 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 135984 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 135985 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAG-TA 136043 Query 208 TCC 210 ||| Sbjct 136044 TCC 136046 Score = 223 bits (246), Expect = 6e-56 Identities = 146/161 (91%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 318320 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 318379 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 318380 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 318439 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 318440 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTT 318480 Score = 163 bits (180), Expect = 5e-38 Identities = 111/125 (89%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 546860 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 546801 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 546800 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 546741 Query 148 CGACA 152 ||||| Sbjct 546740 CGACA 546736 >seq2 Length=3465789 Score = 363 bits (402), Expect = 3e-98 Identities = 243/268 (91%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3168261 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 3168202 Query 88 CTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGC 147 || |||||||||||||||||| || ||| || |||||| | |||||||||||||| Sbjct 3168201 CTGTTAGTGGGTGAACAATCCTACACTTGGTGACTTCTGCGACACAATGATAGGAAGAGC 3168142 Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 207 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3168141 CGACATCGAAGAATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTA 3168082 Query 208 TCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGA-CTAAAGGATCGA 266 |||||||||||||||||||| |||||||||| ||||||| ||| || |||||||||||| Sbjct 3168081 TCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATT-CGAAAGATCTAAAGGATCGA 3168023 Query 267 TAGGCCACACTTTCATGGTTTGTATTCA 294 ||||||| |||||| ||||||||||| Sbjct 3168022 TAGGCCATGCTTTCACAGTTTGTATTCA 3167995 Score = 136 bits (150), Expect = 7e-30 Identities = 83/88 (94%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 28 CGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCC 87 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 3323122 CGTTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCC 3323181 Query 88 CTATTAGTGGGTGAACAATCCAACGCTT 115 || |||||||||||||||||| || ||| Sbjct 3323182 CTGTTAGTGGGTGAACAATCCTACACTT 3323209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854389875360