Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq11 131 3e-28 seq2 131 3e-28 >seq11 Length=1405779 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 93194 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 93137 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 93136 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 93077 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 93076 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 93021 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 135839 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 135782 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 135781 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 135722 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 135721 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 135666 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 318294 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 318237 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 318236 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 318177 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 318176 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 318121 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 366051 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 366108 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 366109 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 366168 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 366169 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 366224 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 546886 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 546943 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 546944 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 547003 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 547004 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 547059 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 595611 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 595554 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 595553 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 595494 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 595493 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 595438 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 670564 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 670507 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 670506 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 670447 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 670446 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 670391 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 741706 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 741649 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 741648 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 741589 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 741588 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 741533 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 770583 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 770640 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 770641 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 770700 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 770701 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 770756 >seq2 Length=3465789 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 3168287 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 3168344 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 3168345 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 3168404 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 3168405 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 3168460 Score = 131 bits (144), Expect = 3e-28 Identities = 139/177 (79%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| | |||||| || ||||| |||||| | |||| ||| ||| Sbjct 3323096 GTACGAGAGGAACCGTTGG-TTCAGA-TATTTGGTCATTGCGGTTAGCTGAACAGCTAGT 3323039 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 3323038 GCCGCGAAGCTACCATCTGTAGGATTATGACTGAACGCCTCTAAGTCAGAATCCATGCTG 3322979 Query 121 GAA--CGGGGTGATTCTCTCCTGCACATCGTAGTCGGAT-ACGAATAGGCTTCGGCC 174 ||| || | |||| | || | || || || || ||| ||||||||||||| Sbjct 3322978 GAAAGCGACGATATTCACCTCTCCCGATGTTACACGCATCACG-ATAGGCTTCGGCC 3322923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819190595840