Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq27 111 4e-22 >seq27 Length=29948 Score = 111 bits (122), Expect = 4e-22 Identities = 185/267 (69%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| |||||||||||| ||| |||||||||| | | ||||| Sbjct 9872 GCATCTTCACGAATATTTCAATTTCATAAAGTTCATAGTGGAGACAGTGGGGAAGTCGTT 9931 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||| ||| | ||| ||||||||||||||||||||||||||| | | Sbjct 9932 ACACCATTCATGCACGTCAATAATTAGTTGACAAGGAATTTCGCTACCTTAGGACCATCA 9991 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 |||| |||||||| |||| | ||| || || | | || ||| Sbjct 9992 GAGTTATGGCCGCCGATTACTGTTACTTATATTAAAAAAAATTCTTT--TTAA------- 10042 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 | || | | | | || |||||| |||| ||| ||||| || ||| || || ||| Sbjct 10043 ATTTTGCAATACAGTTCCTGGCAGGTGTCAGACCTTATACATCATCTTACGATTTAGCAA 10102 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| ||||||||||| ||||||||||| Sbjct 10103 AGTCCTGTGTTTTTATTAAACAGTCGC 10129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260799319168