Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq27 95.1 4e-17 >seq27 Length=29948 Score = 95.1 bits (104), Expect = 4e-17 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 5 ACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGG 64 ||||||||||||||||||||||||||||||||| | || ||||||||||||||| Sbjct 12540 ACCGCAAGGTTGAAACTCAAAGGAATTGACGGGAGCTTATACGTACGGTGGAGCATGTGG 12481 Query 65 TTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||| ||| |||| ||| |||||||| | |||||| Sbjct 12480 TTTAATCCGATAGTCCGCGTGGAATCTTACCAATTTTTGACA 12439 Score = 86.0 bits (94), Expect = 2e-14 Identities = 127/179 (71%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCA 368 ||| | ||| ||||||| | |||||||||||| |||||||||| |||||| | Sbjct 12227 ATCGTTATGACCCTTATAAATTGGGCTACACATGTGCTACAATATTTTCTACAAAAAGAC 12168 Query 369 GCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGC 428 || | | | |||||||| |||| | | | | | |||| ||| || Sbjct 12167 GCAATTATGAAAATAGGAGCAAATCTTCAAAAGAAAATGTAA-TACAGATTATAGATTGA 12109 Query 429 AACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 ||||| ||||||||||||||||||| |||||||||| ||||| ||| |||||||||| Sbjct 12108 AACTCATCTATATGAAGCTGGAATCGTAAGTAATCGTAAATCAGTATGTTACGGTGAAT 12050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503999187840