Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq27 125 2e-26 >seq27 Length=29948 Score = 125 bits (138), Expect = 2e-26 Identities = 221/315 (70%), Gaps = 9/315 (3%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| ||||||||||||||| |||||||||| | | ||| ||| | || ||| Sbjct 13240 GATTAGGTAGTTGGTAAGGTAAAAGCTTACCAAGCCAAAGATTTTTAGTTGGTTTGTGAG 13181 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 ||||| |||||| || | ||| | | | || ||||| | | || |||||||||| Sbjct 13180 AATGATCAACCACATCGGGATTGAAATAAAGCCCGAACTCTTTATG-AGTCAGCAGTGGG 13122 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||||||| ||||| | |||| |||| |||||| | | | || ||||||||| || Sbjct 13121 GAATATTGGACAATAAACGAAAGTTTGATCCAGCAATACTACATAAGTGATGAAGGCTTT 13062 Query 347 CGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGA--AGCCCC 404 || ||||| || | | ||| ||||||| | | | |||| || | Sbjct 13061 ATCGTTGTAAAACTTATAATTTGATGAA-ATAATGA---TTTGTCA-AAGGAATAGTTCT 13007 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTAC 464 ||| |||| |||||||||||||||||||||| |||| | ||| |||| || |||| Sbjct 13006 GGCAAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGAACGAGCATTATTCGTCTTTAC 12947 Query 465 TGGGGCGTAAAGGGT 479 | |||||||||| || Sbjct 12946 T-GGGCGTAAAGAGT 12933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599191296